6ECF
Vlm2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a dodecadepsipeptide, space group p1
PDB DOI: 10.2210/pdb6ecf/pdb
Classification: HYDROLASE Organism(s): Streptomyces Tsusimaensis , Synthetic Construct
Deposited: 2018-08-07 Deposition Author(s): Alonzo, D.A. , Boddy, C.N. , Chin, J.W. , Dornan, M.H. , Heberlig, G.W. , Huguenin-Dezot, N. , Mahesh, M. , Nguyen, D.P. , Schmeing, T.M.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.5 Å
Vlm2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a dodecadepsipeptide, space group p1
Alonzo, D.A. , Boddy, C.N. , Chin, J.W. , Dornan, M.H. , Heberlig, G.W. , Huguenin-Dezot, N. , Mahesh, M. , Nguyen, D.P. , Schmeing, T.M.
Primary Citation of Related Structures: 6ECF
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Vlm2 | A | 303 | Streptomyces Tsusimaensis , Synthetic Construct | MHHHHHHHHENLYFQGGSSTAGDPTAKLVRLNPRGGDGPGIVFAPPAGGTVLGYIELARHLKGFGEIHGVEAPGLGAGETPVYPSFEEMVQFCSDSAAGVAGDGVYIGGHALGGHIAFYLATMLLDRGIRPKGLIILDTPPRLGDIPVADADLTEEETKVFILAMGIGGMLDQDRDALKDLPYEEAKQLLLDRAKNDPRVSAFLSEDYLDRFLRLQMHQLMYSRDVVLPQRKLDIPIHVFRTKNHAPEVARLFSAWENYAAGEVTFVDIPGDHATMLRAPHVSEVAQLLDRHCGLPSDDGPRG |
| Vlm2 | B | 303 | Streptomyces Tsusimaensis , Synthetic Construct | MHHHHHHHHENLYFQGGSSTAGDPTAKLVRLNPRGGDGPGIVFAPPAGGTVLGYIELARHLKGFGEIHGVEAPGLGAGETPVYPSFEEMVQFCSDSAAGVAGDGVYIGGHALGGHIAFYLATMLLDRGIRPKGLIILDTPPRLGDIPVADADLTEEETKVFILAMGIGGMLDQDRDALKDLPYEEAKQLLLDRAKNDPRVSAFLSEDYLDRFLRLQMHQLMYSRDVVLPQRKLDIPIHVFRTKNHAPEVARLFSAWENYAAGEVTFVDIPGDHATMLRAPHVSEVAQLLDRHCGLPSDDGPRG |
| Vlm2 | C | 303 | Streptomyces Tsusimaensis , Synthetic Construct | MHHHHHHHHENLYFQGGSSTAGDPTAKLVRLNPRGGDGPGIVFAPPAGGTVLGYIELARHLKGFGEIHGVEAPGLGAGETPVYPSFEEMVQFCSDSAAGVAGDGVYIGGHALGGHIAFYLATMLLDRGIRPKGLIILDTPPRLGDIPVADADLTEEETKVFILAMGIGGMLDQDRDALKDLPYEEAKQLLLDRAKNDPRVSAFLSEDYLDRFLRLQMHQLMYSRDVVLPQRKLDIPIHVFRTKNHAPEVARLFSAWENYAAGEVTFVDIPGDHATMLRAPHVSEVAQLLDRHCGLPSDDGPRG |
| Vlm2 | D | 303 | Streptomyces Tsusimaensis , Synthetic Construct | MHHHHHHHHENLYFQGGSSTAGDPTAKLVRLNPRGGDGPGIVFAPPAGGTVLGYIELARHLKGFGEIHGVEAPGLGAGETPVYPSFEEMVQFCSDSAAGVAGDGVYIGGHALGGHIAFYLATMLLDRGIRPKGLIILDTPPRLGDIPVADADLTEEETKVFILAMGIGGMLDQDRDALKDLPYEEAKQLLLDRAKNDPRVSAFLSEDYLDRFLRLQMHQLMYSRDVVLPQRKLDIPIHVFRTKNHAPEVARLFSAWENYAAGEVTFVDIPGDHATMLRAPHVSEVAQLLDRHCGLPSDDGPRG |
| Vlm2 | E | 303 | Streptomyces Tsusimaensis , Synthetic Construct | MHHHHHHHHENLYFQGGSSTAGDPTAKLVRLNPRGGDGPGIVFAPPAGGTVLGYIELARHLKGFGEIHGVEAPGLGAGETPVYPSFEEMVQFCSDSAAGVAGDGVYIGGHALGGHIAFYLATMLLDRGIRPKGLIILDTPPRLGDIPVADADLTEEETKVFILAMGIGGMLDQDRDALKDLPYEEAKQLLLDRAKNDPRVSAFLSEDYLDRFLRLQMHQLMYSRDVVLPQRKLDIPIHVFRTKNHAPEVARLFSAWENYAAGEVTFVDIPGDHATMLRAPHVSEVAQLLDRHCGLPSDDGPRG |
| Vlm2 | F | 303 | Streptomyces Tsusimaensis , Synthetic Construct | MHHHHHHHHENLYFQGGSSTAGDPTAKLVRLNPRGGDGPGIVFAPPAGGTVLGYIELARHLKGFGEIHGVEAPGLGAGETPVYPSFEEMVQFCSDSAAGVAGDGVYIGGHALGGHIAFYLATMLLDRGIRPKGLIILDTPPRLGDIPVADADLTEEETKVFILAMGIGGMLDQDRDALKDLPYEEAKQLLLDRAKNDPRVSAFLSEDYLDRFLRLQMHQLMYSRDVVLPQRKLDIPIHVFRTKNHAPEVARLFSAWENYAAGEVTFVDIPGDHATMLRAPHVSEVAQLLDRHCGLPSDDGPRG |
| dodecadepsipeptide | G | 12 | Streptomyces Tsusimaensis , Synthetic Construct | VVXVVVXVVVXV |
| dodecadepsipeptide | I | 12 | Streptomyces Tsusimaensis , Synthetic Construct | VVXVVVXVVVXV |
| dodecadepsipeptide | H | 12 | Streptomyces Tsusimaensis , Synthetic Construct | VVXVVVXVVVXV |
| dodecadepsipeptide | K | 12 | Streptomyces Tsusimaensis , Synthetic Construct | VVXVVVXVVVXV |
| dodecadepsipeptide | J | 12 | Streptomyces Tsusimaensis , Synthetic Construct | VVXVVVXVVVXV |
| dodecadepsipeptide | L | 12 | Streptomyces Tsusimaensis , Synthetic Construct | VVXVVVXVVVXV |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2018-08-07 Deposition Author(s): Alonzo, D.A. , Boddy, C.N. , Chin, J.W. , Dornan, M.H. , Heberlig, G.W. , Huguenin-Dezot, N. , Mahesh, M. , Nguyen, D.P. , Schmeing, T.M.