6DZP
Cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal subunit
PDB DOI: 10.2210/pdb6dzp/pdb
Classification: RIBOSOME Organism(s): Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155
Deposited: 2018-07-05 Deposition Author(s): Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.42 Å
Cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal subunit
Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.
Primary Citation of Related Structures: 6DZP
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L30 | A | 61 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVGK |
| 50S ribosomal protein L11 | J | 142 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MAPKKKVAGLIKLQIQAGQANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGNVIPVEITVYEDRSFTFALKTPPAAKLLLKAAGVQKGSGEPHKTKVAKVTWDQVREIAETKKADLNANDIDAAAKIIAGTARSMGITVE |
| 50S ribosomal protein L13 | K | 146 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | PTYTPKAGDTTRSWYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAAQQPIPFEIKQVAQ |
| 50S ribosomal protein L14 | L | 122 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MIQQESRLKVADNTGAKEILCIRVLGGSSRRYAGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRADGSYIKFDENAAVIIKNDNDPRGTRIFGPVGRELREKKFMKIVSLAPEVL |
| 50S ribosomal protein L15 | M | 147 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MSVIKLHDLKPAPGEKKAKTRVGRGEGSKGKTAGRGTKGTKARKNVPVMFEGGQMPIHMRLPKLKGFKNRFRTEYQVVNVGDINKAFPQGGTVGVDELVAKGLVRKNSLVKVLGDGKLTVKVDVTANKFSGSAREAITAAGGSATEL |
| 50S ribosomal protein L16 | N | 138 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MLIPRKVKHRKQHHPEQRGIASGGTSVSFGDYGIQALEHAYITNRQIESARIAINRHIKRGGKVWINIFPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSYPDEKTARDALTRAIHKLPIKARIVTREEQF |
| 50S ribosomal protein L17 | O | 199 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MPKPTKGPRLGGSSSHQSALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGALHNRREVMKKIRDKDVVHTLFAEIGPFYADRNGGYTRIIKVENRKGDNAPMAVIELVREKTVTDEANRARRAAASQAKADERADEKADEKAEETVEETTEAPAEESTEAAAEETVEETTEAPAEESTEAAEESEAKDDTK |
| 50S ribosomal protein L18 | P | 126 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | AHKPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAHSVRVGQLIAERAKAAGVETVVFDRGGYTYGGRIAALADAAREAGLKF |
| 50S ribosomal protein L19 | Q | 113 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNIDHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR |
| 50S ribosomal protein L20 | R | 129 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLIQGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPSGEAA |
| 50S ribosomal protein L21 | S | 102 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | ATYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGIK |
| 50S ribosomal protein L32 | B | 57 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MAVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLDKR |
| 50S ribosomal protein L22 | T | 152 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | STVTEFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPPKQKGASAASARSRRAQGSKAAATKKSAETKEGSE |
| 50S ribosomal protein L23 | U | 99 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | ATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTKRAIVKLAAGSKPIDLFGAPA |
| 50S ribosomal protein L24 | V | 105 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI |
| 50S ribosomal protein L25 | W | 215 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MAKTANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGAGETGAAEAPAEEAPAEEPAE |
| 50S ribosomal protein L27 | X | 88 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MAHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNIVPVARPEA |
| 50S ribosomal protein L29 | Z | 77 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MAVGTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELGLASGPAGEES |
| 50S ribosomal protein L2 | C | 278 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MGIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGKGGRNAHGRITTRHKGGGHKRAYRVIDFRRHDKDGVNAKVAHIEYDPNRTANIALLHYLDGEKRYIIAPQGLKQGDVIESGANADIKPGNNLPLRNIPAGTVIHAVELRPGGGAKLARSAGVSIQLLGKEGTYAALRMPSGEIRRVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGKRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRKPNKPSDKLIVRRRRTGKKR |
| 50S ribosomal protein L3 | D | 217 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MARKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTTERDGYSAVQLAYGEISPRKVIKPVAGQFAAAGVNPRRHVAELRLDDEAAVAEYEVGQELTAEIFSDGAYVDVTGTSKGKGFAGTMKRHGFRGQGAAHGAQAVHRRPGSIGGCATPGRVFKGTRMSGRMGNDRVTTQNLKVHKVDAENGVLLIKGAIPGRNGGLVVVRSAIKRGEK |
| 50S ribosomal protein L4 | E | 214 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | TLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPDQLNTYDVLNADDVVFSVEALNAYISANSKEGASV |
| 50S ribosomal protein L5 | F | 186 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | TTTEKALPRLKQRYREEIREALQQEFNYANVMQIPGVVKVVVNMGVGDAARDAKLINGAINDLALITGQKPEVRRARKSIAQFKLREGMPIGARVTLRGDRMWEFLDRLISIALPRIRDFRGLSPKQFDGTGNYTFGLNEQSMFHEIDVDSIDRPRGMDITVVTTATNDAEGRALLRALGFPFKEN |
| 50S ribosomal protein L6 | G | 179 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MSRIGKQPVPVPSGVDVTINGQNLSVKGPKGTLTLDVAEPISVSRAEDGAIVVTRPDDERRSRSLHGLSRTLIANLVTGVTEGYTQKMEIFGVGYRVQLKGQNLEFALGYSHPVLIEAPEGITFAVESPTKFSVSGIDKQKVGQISAVIRRLRRPDPYKGKGVRYEGEQIRRKVGKTGK |
| 50S ribosomal protein L28 | Y | 78 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MSAHCQVTGRGPGFGNSVSHSHRRTPRRWDPNIQNKTYYLPSEGRRIRLRVSAKGIKVIDRDGIEAVVARMRARGEKY |
| Uncharacterized protein | 3 | 23 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | AKRGRKKRDRKHSKANHGKRPNA |
| 50S ribosomal protein L9 | H | 151 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MKLILTAEVEHLGAAGDTVEVKDGYGRNYLLPRGLAIVASRGAERQAEEIRRARESKVIRDIEHANELKTALEGLGDVTLSVNAAGDTGKLFGSVTAADVVNAIKKAGGPNLDKRTVQLAKAHIKSVGTHPVTVKLHTGVEAKVSLNVVAQ |
| 50S ribosomal protein L10 | I | 175 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MAKADKATAVADIAEQFKASTATVVTEYRGLTVANLAELRRALGDSATYTVAKNTLVKRAASEAGIEGLDELFAGPTAIAFVKGEAVDAAKAIKKFAKDNKALVIKGGYMDGKALSVADVEKIADLESREVLLAKLAGAMKGNLSKAAGLFNAPASQVARLAAALQEKKAGEEAA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-07-05 Deposition Author(s): Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.