PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6DZP

Cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal subunit

PDB DOI: 10.2210/pdb6dzp/pdb

Classification: RIBOSOME
Organism(s): Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum

Deposited: 2018-07-05
Deposition Author(s): Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.42 Å

Literature

Cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal subunit

Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.

Primary Citation of Related Structures: 6DZP


Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein L30 A 61 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVGK
50S ribosomal protein L11 J 142 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MAPKKKVAGLIKLQIQAGQANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGNVIPVEITVYEDRSFTFALKTPPAAKLLLKAAGVQKGSGEPHKTKVAKVTWDQVREIAETKKADLNANDIDAAAKIIAGTARSMGITVE
50S ribosomal protein L13 K 146 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum PTYTPKAGDTTRSWYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAAQQPIPFEIKQVAQ
50S ribosomal protein L14 L 122 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MIQQESRLKVADNTGAKEILCIRVLGGSSRRYAGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRADGSYIKFDENAAVIIKNDNDPRGTRIFGPVGRELREKKFMKIVSLAPEVL
50S ribosomal protein L15 M 147 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MSVIKLHDLKPAPGEKKAKTRVGRGEGSKGKTAGRGTKGTKARKNVPVMFEGGQMPIHMRLPKLKGFKNRFRTEYQVVNVGDINKAFPQGGTVGVDELVAKGLVRKNSLVKVLGDGKLTVKVDVTANKFSGSAREAITAAGGSATEL
50S ribosomal protein L16 N 138 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MLIPRKVKHRKQHHPEQRGIASGGTSVSFGDYGIQALEHAYITNRQIESARIAINRHIKRGGKVWINIFPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSYPDEKTARDALTRAIHKLPIKARIVTREEQF
50S ribosomal protein L17 O 199 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MPKPTKGPRLGGSSSHQSALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGALHNRREVMKKIRDKDVVHTLFAEIGPFYADRNGGYTRIIKVENRKGDNAPMAVIELVREKTVTDEANRARRAAASQAKADERADEKADEKAEETVEETTEAPAEESTEAAAEETVEETTEAPAEESTEAAEESEAKDDTK
50S ribosomal protein L18 P 126 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum AHKPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAHSVRVGQLIAERAKAAGVETVVFDRGGYTYGGRIAALADAAREAGLKF
50S ribosomal protein L19 Q 113 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNIDHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR
50S ribosomal protein L20 R 129 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLIQGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPSGEAA
50S ribosomal protein L21 S 102 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum ATYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGIK
50S ribosomal protein L32 B 57 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MAVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLDKR
50S ribosomal protein L22 T 152 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum STVTEFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPPKQKGASAASARSRRAQGSKAAATKKSAETKEGSE
50S ribosomal protein L23 U 99 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum ATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTKRAIVKLAAGSKPIDLFGAPA
50S ribosomal protein L24 V 105 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI
50S ribosomal protein L25 W 215 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MAKTANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGAGETGAAEAPAEEAPAEEPAE
50S ribosomal protein L27 X 88 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MAHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNIVPVARPEA
50S ribosomal protein L29 Z 77 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MAVGTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELGLASGPAGEES
50S ribosomal protein L2 C 278 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MGIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGKGGRNAHGRITTRHKGGGHKRAYRVIDFRRHDKDGVNAKVAHIEYDPNRTANIALLHYLDGEKRYIIAPQGLKQGDVIESGANADIKPGNNLPLRNIPAGTVIHAVELRPGGGAKLARSAGVSIQLLGKEGTYAALRMPSGEIRRVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGKRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRKPNKPSDKLIVRRRRTGKKR
50S ribosomal protein L3 D 217 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MARKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTTERDGYSAVQLAYGEISPRKVIKPVAGQFAAAGVNPRRHVAELRLDDEAAVAEYEVGQELTAEIFSDGAYVDVTGTSKGKGFAGTMKRHGFRGQGAAHGAQAVHRRPGSIGGCATPGRVFKGTRMSGRMGNDRVTTQNLKVHKVDAENGVLLIKGAIPGRNGGLVVVRSAIKRGEK
50S ribosomal protein L4 E 214 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum TLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPDQLNTYDVLNADDVVFSVEALNAYISANSKEGASV
50S ribosomal protein L5 F 186 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum TTTEKALPRLKQRYREEIREALQQEFNYANVMQIPGVVKVVVNMGVGDAARDAKLINGAINDLALITGQKPEVRRARKSIAQFKLREGMPIGARVTLRGDRMWEFLDRLISIALPRIRDFRGLSPKQFDGTGNYTFGLNEQSMFHEIDVDSIDRPRGMDITVVTTATNDAEGRALLRALGFPFKEN
50S ribosomal protein L6 G 179 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MSRIGKQPVPVPSGVDVTINGQNLSVKGPKGTLTLDVAEPISVSRAEDGAIVVTRPDDERRSRSLHGLSRTLIANLVTGVTEGYTQKMEIFGVGYRVQLKGQNLEFALGYSHPVLIEAPEGITFAVESPTKFSVSGIDKQKVGQISAVIRRLRRPDPYKGKGVRYEGEQIRRKVGKTGK
50S ribosomal protein L28 Y 78 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MSAHCQVTGRGPGFGNSVSHSHRRTPRRWDPNIQNKTYYLPSEGRRIRLRVSAKGIKVIDRDGIEAVVARMRARGEKY
Uncharacterized protein 3 23 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum AKRGRKKRDRKHSKANHGKRPNA
50S ribosomal protein L9 H 151 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MKLILTAEVEHLGAAGDTVEVKDGYGRNYLLPRGLAIVASRGAERQAEEIRRARESKVIRDIEHANELKTALEGLGDVTLSVNAAGDTGKLFGSVTAADVVNAIKKAGGPNLDKRTVQLAKAHIKSVGTHPVTVKLHTGVEAKVSLNVVAQ
50S ribosomal protein L10 I 175 Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MAKADKATAVADIAEQFKASTATVVTEYRGLTVANLAELRRALGDSATYTVAKNTLVKRAASEAGIEGLDELFAGPTAIAFVKGEAVDAAKAIKKFAKDNKALVIKGGYMDGKALSVADVEKIADLESREVLLAKLAGAMKGNLSKAAGLFNAPASQVARLAAALQEKKAGEEAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-07-05
Deposition Author(s): Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.