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FASTA Sequence PDB Format mmCIF Format
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6DCQ

Ectodomain of full length, wild type hiv-1 glycoprotein clone pc64m18c043 in complex with pgt151 fab

PDB DOI: 10.2210/pdb6dcq/pdb

Classification: VIRAL PROTEIN
Organism(s): Salmonella Enterica , Anoxybacillus Sp. Lm18-11

Deposited: 2018-05-08
Deposition Author(s): Rantalainen, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

6dcq
Literature

Ectodomain of full length, wild type hiv-1 glycoprotein clone pc64m18c043 in complex with pgt151 fab

Rantalainen, K.

Primary Citation of Related Structures: 6DCQ


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp160 A 480 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 SAANNLWVTVYYGVPVWRDAETTLFCASDAKAYDTEVHNVWATHACVPTDPSPQEIHLANVTEKFDMWKNSMVEQMHTDIISLWDESLKPCVKLTPLCITLNCTNITRNVTGGNLTEEGKEELKNCSFNATTELRDKIQKVHSLFYRLDLVELNEGNSSDSNTSMYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCREKEFNGTGPCKKVSTVQCTHGIKPVVSTQLLLNGSLAEGKVKIRCENISNNAKTILVQLTTPVRINCTRPSNNTRTSIRIGPGQSFYATGDIIGDIRKAYCNVSESEWKEALGKVVEQLRNHFNKTITFASSSGGDLEITTHSFNCGGEFFYCNTSSLFNSTWDGNSATNSTQVPNGTITLPCRIKQIINMWQRTGQAMYAPPIPGKIRCDSNITGLILIRDGGNNNNESETFRPGGGDMRNNWRSELYKYKVVKIDPLGVAPTGAKRRVVEREKR
Envelope glycoprotein gp160 C 480 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 SAANNLWVTVYYGVPVWRDAETTLFCASDAKAYDTEVHNVWATHACVPTDPSPQEIHLANVTEKFDMWKNSMVEQMHTDIISLWDESLKPCVKLTPLCITLNCTNITRNVTGGNLTEEGKEELKNCSFNATTELRDKIQKVHSLFYRLDLVELNEGNSSDSNTSMYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCREKEFNGTGPCKKVSTVQCTHGIKPVVSTQLLLNGSLAEGKVKIRCENISNNAKTILVQLTTPVRINCTRPSNNTRTSIRIGPGQSFYATGDIIGDIRKAYCNVSESEWKEALGKVVEQLRNHFNKTITFASSSGGDLEITTHSFNCGGEFFYCNTSSLFNSTWDGNSATNSTQVPNGTITLPCRIKQIINMWQRTGQAMYAPPIPGKIRCDSNITGLILIRDGGNNNNESETFRPGGGDMRNNWRSELYKYKVVKIDPLGVAPTGAKRRVVEREKR
Envelope glycoprotein gp160 E 480 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 SAANNLWVTVYYGVPVWRDAETTLFCASDAKAYDTEVHNVWATHACVPTDPSPQEIHLANVTEKFDMWKNSMVEQMHTDIISLWDESLKPCVKLTPLCITLNCTNITRNVTGGNLTEEGKEELKNCSFNATTELRDKIQKVHSLFYRLDLVELNEGNSSDSNTSMYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCREKEFNGTGPCKKVSTVQCTHGIKPVVSTQLLLNGSLAEGKVKIRCENISNNAKTILVQLTTPVRINCTRPSNNTRTSIRIGPGQSFYATGDIIGDIRKAYCNVSESEWKEALGKVVEQLRNHFNKTITFASSSGGDLEITTHSFNCGGEFFYCNTSSLFNSTWDGNSATNSTQVPNGTITLPCRIKQIINMWQRTGQAMYAPPIPGKIRCDSNITGLILIRDGGNNNNESETFRPGGGDMRNNWRSELYKYKVVKIDPLGVAPTGAKRRVVEREKR
Envelope glycoprotein gp160 B 352 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 AVGIGAVLFGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQSNLLRAIEAQQHLLRLTVWGIKQLQARVLAVERYLSDQQLLGIWGCSGKLICTTNVPWNSSWSNKSQDEIWNNMTWLQWDKEISNYTDTIYYLIEKSQNQQEVNEKDLLALDKWTNLWNWFGISNWLWYIRIFIMIVGGLIGLRIIFAVLSVINRVRQGYSPVSFQTLTPNPRELDRPGGIEEGDGELGKTRSIRLVGGFLALFWDDLRSLCLFSYHRLRDFILIAARILELLGHNSLKGLRLGWEGLKYLGNLLLYWGRELKNSAVNLVDTIAIVVAGWTDRVIEVLQGIGRAFLHIPRRIRQGFERALL
Envelope glycoprotein gp160 D 352 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 AVGIGAVLFGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQSNLLRAIEAQQHLLRLTVWGIKQLQARVLAVERYLSDQQLLGIWGCSGKLICTTNVPWNSSWSNKSQDEIWNNMTWLQWDKEISNYTDTIYYLIEKSQNQQEVNEKDLLALDKWTNLWNWFGISNWLWYIRIFIMIVGGLIGLRIIFAVLSVINRVRQGYSPVSFQTLTPNPRELDRPGGIEEGDGELGKTRSIRLVGGFLALFWDDLRSLCLFSYHRLRDFILIAARILELLGHNSLKGLRLGWEGLKYLGNLLLYWGRELKNSAVNLVDTIAIVVAGWTDRVIEVLQGIGRAFLHIPRRIRQGFERALL
Envelope glycoprotein gp160 F 352 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 AVGIGAVLFGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQSNLLRAIEAQQHLLRLTVWGIKQLQARVLAVERYLSDQQLLGIWGCSGKLICTTNVPWNSSWSNKSQDEIWNNMTWLQWDKEISNYTDTIYYLIEKSQNQQEVNEKDLLALDKWTNLWNWFGISNWLWYIRIFIMIVGGLIGLRIIFAVLSVINRVRQGYSPVSFQTLTPNPRELDRPGGIEEGDGELGKTRSIRLVGGFLALFWDDLRSLCLFSYHRLRDFILIAARILELLGHNSLKGLRLGWEGLKYLGNLLLYWGRELKNSAVNLVDTIAIVVAGWTDRVIEVLQGIGRAFLHIPRRIRQGFERALL
Immunoglobulin G PGT151 Fab, Heavy chain H 240 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 RVQLVESGGGVVQPGKSVRLSCVVSDFPFSKYPMYWVRQAPGKGLEWVAAISGDAWHVVYSNSVQGRFLVSRDNVKNTLYLEMNSLKIEDTAVYRCARMFQESGPPRLDRWSGRNYYYYSGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
Immunoglobulin G PGT151 Fab, Heavy chain M 240 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 RVQLVESGGGVVQPGKSVRLSCVVSDFPFSKYPMYWVRQAPGKGLEWVAAISGDAWHVVYSNSVQGRFLVSRDNVKNTLYLEMNSLKIEDTAVYRCARMFQESGPPRLDRWSGRNYYYYSGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
Immunoglobulin G PGT151 Fab, Light chain L 219 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 DIVMTQTPLSLSVTPGQPASISCKSSESLRQSNGKTSLYWYRQKPGQSPQLLVFEVSNRFSGVSDRFVGSGSGTDFTLRISRVEAEDVGFYYCMQSKDFPLTFGGGTKVDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Immunoglobulin G PGT151 Fab, Light chain N 219 Salmonella Enterica , Anoxybacillus Sp. Lm18-11 DIVMTQTPLSLSVTPGQPASISCKSSESLRQSNGKTSLYWYRQKPGQSPQLLVFEVSNRFSGVSDRFVGSGSGTDFTLRISRVEAEDVGFYYCMQSKDFPLTFGGGTKVDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-05-08
Deposition Author(s): Rantalainen, K.