6CUF
Cryo-em structure at 4.2 a resolution of vaccine-elicited antibody vfp1.01 in complex with hiv-1 env bg505 ds-sosip, and antibodies vrc03 and pgt122
PDB DOI: 10.2210/pdb6cuf/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus
Deposited: 2018-03-26 Deposition Author(s): Acharya, P. , Carragher, B. , Kwong, P.D. , Potter, C.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.0 Å
Cryo-em structure at 4.2 a resolution of vaccine-elicited antibody vfp1.01 in complex with hiv-1 env bg505 ds-sosip, and antibodies vrc03 and pgt122
Acharya, P. , Carragher, B. , Kwong, P.D. , Potter, C.S.
Primary Citation of Related Structures: 6CUF
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| vFP1.01 heavy chain | 3 | 211 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | QVQLQQSGTELVWPGTSVTLSCKASGYTFTDYEIHWVKQTPVHGLEWIGAIVPKTGYTAYNQKFRGKAILTADKSSSTAYMDLRRLTSEDSAVYYCTRLRNYWYFDVWGTGTTVTVSPASTKGPSVFPLAPGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP |
| vFP1.01 heavy chain | H | 211 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | QVQLQQSGTELVWPGTSVTLSCKASGYTFTDYEIHWVKQTPVHGLEWIGAIVPKTGYTAYNQKFRGKAILTADKSSSTAYMDLRRLTSEDSAVYYCTRLRNYWYFDVWGTGTTVTVSPASTKGPSVFPLAPGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP |
| vFP1.01 Light chain | 4 | 219 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | DFLMAQTPLSLPVSLGDQASISCRSSQSIVYSDGNTYLEWYLQRPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGIYYCFQGSHVPYTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| vFP1.01 Light chain | L | 219 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | DFLMAQTPLSLPVSLGDQASISCRSSQSIVYSDGNTYLEWYLQRPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGIYYCFQGSHVPYTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| PGT122 Heavy chain | 5 | 132 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS |
| PGT122 Heavy chain | M | 132 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS |
| PGT122 light chain | 6 | 105 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | TFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL |
| PGT122 light chain | N | 105 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | TFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL |
| VRC03 light chain | 7 | 102 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH |
| VRC03 light chain | R | 102 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH |
| VRC03 heavy chain | 8 | 128 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWGQGTVVVV |
| VRC03 heavy chain | Q | 128 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWGQGTVVVV |
| Envelope glycoprotein gp41 | C | 153 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| Envelope glycoprotein gp120 | 2 | 473 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV |
| Envelope glycoprotein gp41 | D | 153 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| Envelope glycoprotein gp41 | A | 153 | Homo Sapiens , Human Immunodeficiency Virus 1 , Mus Musculus | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-03-26 Deposition Author(s): Acharya, P. , Carragher, B. , Kwong, P.D. , Potter, C.S.