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6CK9

Crystal structure of hiv-1 conc_base0 prefusion env trimer in complex with human antibody fragment 3h109l and 35o22 variants at 3.5 angstrom

PDB DOI: 10.2210/pdb6ck9/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2018-02-27
Deposition Author(s): Kwong, P.D. , Lai, Y.-T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.714 Å

Literature

Crystal structure of hiv-1 conc_base0 prefusion env trimer in complex with human antibody fragment 3h109l and 35o22 variants at 3.5 angstrom

Kwong, P.D. , Lai, Y.-T.

Primary Citation of Related Structures: 6CK9


Proteins
Molecule Chains Sequence Length Organism Sequence
gp41 ectodomain of Envelope glycoprotein gp160 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQSNLLRAPEAQQHMLQLTVWGFKQLQARVLAIERYLEVQQLLGIWGCSGKLICCTAVPWNSSWSNKSQEDIWDNMTWMQWDREISNYTDTIYRLLEESQFQQEINEKDLLALD
35O22 scFv heavy chain portion D 134 Homo Sapiens , Human Immunodeficiency Virus 1 QGQLVQSGATTTKPGSSVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVIMTTDTEVPVTSFTSTGAAYMEIRNLTSDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLTVSSAST
35O22 scFv light chain portion E 114 Homo Sapiens , Human Immunodeficiency Virus 1 SQSVLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQS
gp120 of Envelope glycoprotein gp160 G 463 Homo Sapiens , Human Immunodeficiency Virus 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNDMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNVNVTNTNNNNMKEEMKNCSFNTTTEIRDKKQKEYALFYRLDIVPLNENSSEYRLINCNTSTITQICPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTDNAKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQTFYATGDIIGDIRQAHCNISEAKWNKTLQRVKKKLKEHFPNKTIKFAPSSGGDLEITTHSFNCRGEFFYCNTSKLFNSTYNNTTSNSTITLPCRIKQIINMWQEVGRAMYAPPIAGNITCKSNITGLLLTRDGGNNNNNTETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTKCKRRVVERRRRRR
3H109L Fab heavy chain H 244 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLQESGPGLVKPSETLSLTCTVSGGSISNYYWSWIRQSPGKGLEWIGYISDSESTNYNPSLKSRVIISVDTSKNQLSLKLNSVTAADSAIYYCARAQQGKRIYGMVSFGEFFYYYYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
3H109L Fab light chain L 217 Homo Sapiens , Human Immunodeficiency Virus 1 SVTSYVRPLSVALGETASISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPMQWKMHKSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2018-02-27
Deposition Author(s): Kwong, P.D. , Lai, Y.-T.