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FASTA Sequence PDB Format mmCIF Format
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6CIM

Pre-reaction complex, rag1(e962q)/2-nicked/intact 12/23rss complex in mn2+

PDB DOI: 10.2210/pdb6cim/pdb

Classification: RECOMBINATION/DNA
Organism(s): Homo Sapiens , Mus Musculus , Synthetic Construct

Deposited: 2018-02-24
Deposition Author(s): Chen, X. , Chuenchor, W. , Gellert, M. , Kim, M.S. , Yang, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.6 Å

6cim
Literature

Pre-reaction complex, rag1(e962q)/2-nicked/intact 12/23rss complex in mn2+

Chen, X. , Chuenchor, W. , Gellert, M. , Kim, M.S. , Yang, W.

Primary Citation of Related Structures: 6CIM


Proteins
Molecule Chains Sequence Length Organism Sequence
V(D)J recombination-activating protein 1 A 625 Homo Sapiens , Mus Musculus , Synthetic Construct VHINKGGRPRQHLLSLTRRAQKHRLRELKIQVKEFADKEEGGDVKAVCLTLFLLALRARNEHRQADELEAIMQGRGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHPFEWQPPLKNVSSRTDVGIIDGLSGLASSVDEYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTVMRITIEHGSQNVKVFEEPKPNSELCCKPLCLMLADESDHETLTAILSPLIAEREAMKSSELTLEMGGIPRTFKFIFRGTGYDEKLVREVEGLEASGSVYICTLCDTTRLEASQNLVFHSITRSHAENLQRYEVWRSNPYHESVEELRDRVKGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKHPNASKEERKRWQATLDKHLRKRMNLKPIMRMNGNFARKLMTQETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSCPAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASEGNQSGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNA
V(D)J recombination-activating protein 1 C 625 Homo Sapiens , Mus Musculus , Synthetic Construct VHINKGGRPRQHLLSLTRRAQKHRLRELKIQVKEFADKEEGGDVKAVCLTLFLLALRARNEHRQADELEAIMQGRGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHPFEWQPPLKNVSSRTDVGIIDGLSGLASSVDEYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTVMRITIEHGSQNVKVFEEPKPNSELCCKPLCLMLADESDHETLTAILSPLIAEREAMKSSELTLEMGGIPRTFKFIFRGTGYDEKLVREVEGLEASGSVYICTLCDTTRLEASQNLVFHSITRSHAENLQRYEVWRSNPYHESVEELRDRVKGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKHPNASKEERKRWQATLDKHLRKRMNLKPIMRMNGNFARKLMTQETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSCPAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASEGNQSGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNA
V(D)J recombination-activating protein 2 B 359 Homo Sapiens , Mus Musculus , Synthetic Construct MSLQMVTVGHNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHFDIKQNHLKLKPAIFSKDSCYLPPLRYPATCSYKGSIDSDKHQYIIHGGKTPNNELSDKIYIMSVACKNNKKVTFRCTEKDLVGDVPEPRYGHSIDVVYSRGKSMGVLFGGRSYMPSTQRTTEKWNSVADCLPHVFLIDFEFGCATSYILPELQDGLSFHVSIARNDTVYILGGHSLASNIRPANLYRIRVDLPLGTPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMVCSLVSLGDNTIEISEMETPDWTSDIKHSKIWFGSNMGNGTIFLGIPGDNKQAMSEAFYFYTLRCSEEDLSEDQ
V(D)J recombination-activating protein 2 D 359 Homo Sapiens , Mus Musculus , Synthetic Construct MSLQMVTVGHNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHFDIKQNHLKLKPAIFSKDSCYLPPLRYPATCSYKGSIDSDKHQYIIHGGKTPNNELSDKIYIMSVACKNNKKVTFRCTEKDLVGDVPEPRYGHSIDVVYSRGKSMGVLFGGRSYMPSTQRTTEKWNSVADCLPHVFLIDFEFGCATSYILPELQDGLSFHVSIARNDTVYILGGHSLASNIRPANLYRIRVDLPLGTPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMVCSLVSLGDNTIEISEMETPDWTSDIKHSKIWFGSNMGNGTIFLGIPGDNKQAMSEAFYFYTLRCSEEDLSEDQ
High mobility group protein B1 N 163 Homo Sapiens , Mus Musculus , Synthetic Construct MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Nicked 12RSS intermediate reverse strand f 40 NA CGGGTTTTTGTTAAGGGCTGTATCACTGTGTAAGACAGGC
DNA (5'-D(*GP*CP*CP*TP*GP*TP*CP*TP*TP*A)-3') i 10 NA GCCTGTCTTA
Nicked 12RSS intermediate forward strand l 30 NA CACAGTGATACAGCCCTTAACAAAAACCCG
Intact 23RSS substrate reverse strand g 56 NA CGGGTTTTTGTCTGGCTTCACACTTGATTTGCATCACTGTGTAAGACAGGCCAGAT
Intact 23RSS substrate forward strand j 56 NA ATCTGGCCTGTCTTACACAGTGATGCAAATCAAGTGTGAAGCCAGACAAAAACCCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2018-02-24
Deposition Author(s): Chen, X. , Chuenchor, W. , Gellert, M. , Kim, M.S. , Yang, W.