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6C9I

Single-particle reconstruction of darp14 - a designed protein scaffold displaying ~17kda darpin proteins - scaffold

PDB DOI: 10.2210/pdb6c9i/pdb

Classification: DE NOVO PROTEIN
Organism(s): Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3)

Deposited: 2018-01-26
Deposition Author(s): Gonen, S. , Gonen, T. , Liu, Y. , Yeates, T.O.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.09 Å

6c9i
Literature

Single-particle reconstruction of darp14 - a designed protein scaffold displaying ~17kda darpin proteins - scaffold

Gonen, S. , Gonen, T. , Liu, Y. , Yeates, T.O.

Primary Citation of Related Structures: 6C9I


Proteins
Molecule Chains Sequence Length Organism Sequence
DARP14 - Subunit A with DARPin A 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin B 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin C 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin D 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin I 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin J 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin K 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin L 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin Q 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin R 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin S 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit A with DARPin T 163 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MRITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIAWLLKLILRYMEMVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAEAAAYLLALSDLLFLLARVIEIE
DARP14 - Subunit B E 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B F 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B G 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B H 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B M 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B N 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B O 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B P 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B U 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B V 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B W 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
DARP14 - Subunit B X 131 Pseudomonas Aeruginosa (Strain Atcc 15692 / Dsm 22644 / Cip 104116 / Jcm 14847 / Lmg 12228 / 1C / Prs 101 / Pao1) , Pyrococcus Horikoshii (Strain Atcc 700860 / Dsm 12428 / Jcm 9974 / Nbrc 100139 / Ot-3) MPHLVIEATANLRLETSPGELLEQANKALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDIATRTLLGASLCAVLAEAVAGGGEEGVQVSVEVREMERLSYAKRVVARQRLEHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-01-26
Deposition Author(s): Gonen, S. , Gonen, T. , Liu, Y. , Yeates, T.O.