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FASTA Sequence PDB Format mmCIF Format
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6BT3

High-resolution structure analysis of antibody v5 conformational epitope on human papillomavirus 16

PDB DOI: 10.2210/pdb6bt3/pdb

Classification: VIRUS
Organism(s): Human Papillomavirus Type 16 , Mus Musculus

Deposited: 2017-12-05
Deposition Author(s): Ashley, R.E. , Brendle, S.A. , Bywaters, S.M. , Christensen, N.D. , Conway, J.F. , Guan, J. , Hafenstein, S. , Makhov, A.M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.7 Å

6bt3
Literature

High-resolution structure analysis of antibody v5 conformational epitope on human papillomavirus 16

Ashley, R.E. , Brendle, S.A. , Bywaters, S.M. , Christensen, N.D. , Conway, J.F. , Guan, J. , Hafenstein, S. , Makhov, A.M.

Primary Citation of Related Structures: 6BT3


Proteins
Molecule Chains Sequence Length Organism Sequence
V5 Fab Light-chain A 220 Human Papillomavirus Type 16 , Mus Musculus DIVMTQSPSSLAMSVGQKVTMSCKSSQSLLDSRNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYSTPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWAIDGAERAGGVLNSFTGQDSKDSTYSMSSTLTLTKDEYERHASYTCEATHKTSTAPIVKSFNRGAA
V5 Fab Light-chain C 220 Human Papillomavirus Type 16 , Mus Musculus DIVMTQSPSSLAMSVGQKVTMSCKSSQSLLDSRNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYSTPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWAIDGAERAGGVLNSFTGQDSKDSTYSMSSTLTLTKDEYERHASYTCEATHKTSTAPIVKSFNRGAA
V5 Fab Light-chain E 220 Human Papillomavirus Type 16 , Mus Musculus DIVMTQSPSSLAMSVGQKVTMSCKSSQSLLDSRNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYSTPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWAIDGAERAGGVLNSFTGQDSKDSTYSMSSTLTLTKDEYERHASYTCEATHKTSTAPIVKSFNRGAA
V5 Fab Light-chain G 220 Human Papillomavirus Type 16 , Mus Musculus DIVMTQSPSSLAMSVGQKVTMSCKSSQSLLDSRNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYSTPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWAIDGAERAGGVLNSFTGQDSKDSTYSMSSTLTLTKDEYERHASYTCEATHKTSTAPIVKSFNRGAA
V5 Fab Heavy-chain B 223 Human Papillomavirus Type 16 , Mus Musculus EVKLEQSGAELARPGASVKLSCKASGYTFASYWMQWVKQRPGQGLEWIGAIYPGDGDTWYTQKFKGKATLTADKSSSTAYMQLSSLASEDSAVYYCARPPYYYGTTYYFDYWGQGTTLTVSGAKTTAPSVYPLAPAAGAAGAGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLADLYTLSSSVTVTSSTWPAESITCNVAHPASSTKVDKKIEPRG
V5 Fab Heavy-chain D 223 Human Papillomavirus Type 16 , Mus Musculus EVKLEQSGAELARPGASVKLSCKASGYTFASYWMQWVKQRPGQGLEWIGAIYPGDGDTWYTQKFKGKATLTADKSSSTAYMQLSSLASEDSAVYYCARPPYYYGTTYYFDYWGQGTTLTVSGAKTTAPSVYPLAPAAGAAGAGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLADLYTLSSSVTVTSSTWPAESITCNVAHPASSTKVDKKIEPRG
V5 Fab Heavy-chain F 223 Human Papillomavirus Type 16 , Mus Musculus EVKLEQSGAELARPGASVKLSCKASGYTFASYWMQWVKQRPGQGLEWIGAIYPGDGDTWYTQKFKGKATLTADKSSSTAYMQLSSLASEDSAVYYCARPPYYYGTTYYFDYWGQGTTLTVSGAKTTAPSVYPLAPAAGAAGAGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLADLYTLSSSVTVTSSTWPAESITCNVAHPASSTKVDKKIEPRG
V5 Fab Heavy-chain H 223 Human Papillomavirus Type 16 , Mus Musculus EVKLEQSGAELARPGASVKLSCKASGYTFASYWMQWVKQRPGQGLEWIGAIYPGDGDTWYTQKFKGKATLTADKSSSTAYMQLSSLASEDSAVYYCARPPYYYGTTYYFDYWGQGTTLTVSGAKTTAPSVYPLAPAAGAAGAGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLADLYTLSSSVTVTSSTWPAESITCNVAHPASSTKVDKKIEPRG
Major capsid protein L1 I 503 Human Papillomavirus Type 16 , Mus Musculus MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKR
Major capsid protein L1 J 503 Human Papillomavirus Type 16 , Mus Musculus MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKR
Major capsid protein L1 K 503 Human Papillomavirus Type 16 , Mus Musculus MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKR
Major capsid protein L1 L 503 Human Papillomavirus Type 16 , Mus Musculus MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKR
Major capsid protein L1 M 503 Human Papillomavirus Type 16 , Mus Musculus MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKR
Major capsid protein L1 N 503 Human Papillomavirus Type 16 , Mus Musculus MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-12-05
Deposition Author(s): Ashley, R.E. , Brendle, S.A. , Bywaters, S.M. , Christensen, N.D. , Conway, J.F. , Guan, J. , Hafenstein, S. , Makhov, A.M.