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FASTA Sequence PDB Format mmCIF Format
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6B44

Cryo-em structure of type i-f crispr crrna-guided csy surveillance complex with bound target dsdna

PDB DOI: 10.2210/pdb6b44/pdb

Classification: IMMUNE SYSTEM/RNA/DNA
Organism(s): Pseudomonas Aeruginosa , Pseudomonas Aeruginosa (Strain Ucbpp-Pa14) , Synthetic Construct

Deposited: 2017-09-25
Deposition Author(s): Bartesaghi, A. , Earl, L. , Falconieri, V. , Fox, T. , Guo, T.W. , Merk, A. , Patel, D.J. , Rao, P. , Subramaniam, S. , Yang, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

6b44
Literature

Cryo-em structure of type i-f crispr crrna-guided csy surveillance complex with bound target dsdna

Bartesaghi, A. , Earl, L. , Falconieri, V. , Fox, T. , Guo, T.W. , Merk, A. , Patel, D.J. , Rao, P. , Subramaniam, S. , Yang, H.

Primary Citation of Related Structures: 6B44


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated protein Csy1 A 436 Pseudomonas Aeruginosa , Pseudomonas Aeruginosa (Strain Ucbpp-Pa14) , Synthetic Construct GSMTSPLPTPTWQELRQFIESFIQERLQGKLDKLQPDEDDKRQTLLATHRREAWLADAARRVGQLQLVTHTLKPIHPDARGSNLHSLPQAPGQPGLAGSHELGDRLVSDVVGNAAALDVFKFLSLQYQGKNLLNWLTEDSAEALQALSDNAEQAREWRQAFIGITTVKGAPASHSLAKQLYFPLPGSGYHLLAPLFPTSLVHHVHALLREARFGDAAKAAREARSRQESWPHGFSEYPNLAIQKFGGTKPQNISQLNNERRGENWLLPSLPPNWQRQNVNAPMRHSSVFEHDFGRTPEVSRLTRTLQRFLAKTVHNNLAIRQRRAQLVAQICDEALQYAARLRELEPGWSATPGCQLHDAEQLWLDPLRAQTDETFLQRRLRGDWPAEVGNRFANWLNRAVSSDSQILGSPEAAQWSQELSKELTMFKEILEDERD
CRISPR-associated protein Csy2 B 329 Pseudomonas Aeruginosa , Pseudomonas Aeruginosa (Strain Ucbpp-Pa14) , Synthetic Construct MAMSVTDPEALLLLPRLSIQNANAISSPLTWGFPSPGAFTGFVHALQRRVGISLDIELDGVGIVCHRFEAQISQPAGKRTKVFNLTRNPLNRDGSTAAIVEEGRAHLEVSLLLGVHGDGLDDHPAQEIARQVQEQAGAMRLAGGSILPWCNERFPAPNAELLMLGGSDEQRRKNQRRLTRRLLPGFALVSREALLQQHLETLRTTLPEATTLDALLDLCRINFEPPATSSEEEASPPDAAWQVRDKPGWLVPIPAGYNALSPLYLPGEVRNARDRETPLRFVENLFGLGEWLSPHRVAALSDLLWYHHAEPDKGLYRWSTPRFVEHAIA
CRISPR-associated protein Csy3 C 344 Pseudomonas Aeruginosa , Pseudomonas Aeruginosa (Strain Ucbpp-Pa14) , Synthetic Construct MAMSKPILSTASVLAFERKLDPSDALMSAGAWAQRDASQEWPAVTVREKSVRGTISNRLKTKDRDPAKLDASIQSPNLQTVDVANLPSDADTLKVRFTLRVLGGAGTPSACNDAAYRDKLLQTVATYVNDQGFAELARRYAHNLANARFLWRNRVGAEAVEVRINHIRQGEVARAWRFDALAIGLRDFKADAELDALAELIASGLSGSGHVLLEVVAFARIGDGQEVFPSQELILDKGDKKGQKSKTLYSVRDAAAIHSQKIGNALRTIDTWYPDEDGLGPIAVEPYGSVTSQGKAYRQPKQKLDFYTLLDNWVLRDEAPAVEQQHYVIANLIRGGVFGEAEEK
CRISPR-associated protein Csy3 D 344 Pseudomonas Aeruginosa , Pseudomonas Aeruginosa (Strain Ucbpp-Pa14) , Synthetic Construct MAMSKPILSTASVLAFERKLDPSDALMSAGAWAQRDASQEWPAVTVREKSVRGTISNRLKTKDRDPAKLDASIQSPNLQTVDVANLPSDADTLKVRFTLRVLGGAGTPSACNDAAYRDKLLQTVATYVNDQGFAELARRYAHNLANARFLWRNRVGAEAVEVRINHIRQGEVARAWRFDALAIGLRDFKADAELDALAELIASGLSGSGHVLLEVVAFARIGDGQEVFPSQELILDKGDKKGQKSKTLYSVRDAAAIHSQKIGNALRTIDTWYPDEDGLGPIAVEPYGSVTSQGKAYRQPKQKLDFYTLLDNWVLRDEAPAVEQQHYVIANLIRGGVFGEAEEK
CRISPR-associated protein Csy3 E 344 Pseudomonas Aeruginosa , Pseudomonas Aeruginosa (Strain Ucbpp-Pa14) , Synthetic Construct MAMSKPILSTASVLAFERKLDPSDALMSAGAWAQRDASQEWPAVTVREKSVRGTISNRLKTKDRDPAKLDASIQSPNLQTVDVANLPSDADTLKVRFTLRVLGGAGTPSACNDAAYRDKLLQTVATYVNDQGFAELARRYAHNLANARFLWRNRVGAEAVEVRINHIRQGEVARAWRFDALAIGLRDFKADAELDALAELIASGLSGSGHVLLEVVAFARIGDGQEVFPSQELILDKGDKKGQKSKTLYSVRDAAAIHSQKIGNALRTIDTWYPDEDGLGPIAVEPYGSVTSQGKAYRQPKQKLDFYTLLDNWVLRDEAPAVEQQHYVIANLIRGGVFGEAEEK
CRISPR-associated protein Csy3 F 344 Pseudomonas Aeruginosa , Pseudomonas Aeruginosa (Strain Ucbpp-Pa14) , Synthetic Construct MAMSKPILSTASVLAFERKLDPSDALMSAGAWAQRDASQEWPAVTVREKSVRGTISNRLKTKDRDPAKLDASIQSPNLQTVDVANLPSDADTLKVRFTLRVLGGAGTPSACNDAAYRDKLLQTVATYVNDQGFAELARRYAHNLANARFLWRNRVGAEAVEVRINHIRQGEVARAWRFDALAIGLRDFKADAELDALAELIASGLSGSGHVLLEVVAFARIGDGQEVFPSQELILDKGDKKGQKSKTLYSVRDAAAIHSQKIGNALRTIDTWYPDEDGLGPIAVEPYGSVTSQGKAYRQPKQKLDFYTLLDNWVLRDEAPAVEQQHYVIANLIRGGVFGEAEEK
CRISPR-associated protein Csy3 G 344 Pseudomonas Aeruginosa , Pseudomonas Aeruginosa (Strain Ucbpp-Pa14) , Synthetic Construct MAMSKPILSTASVLAFERKLDPSDALMSAGAWAQRDASQEWPAVTVREKSVRGTISNRLKTKDRDPAKLDASIQSPNLQTVDVANLPSDADTLKVRFTLRVLGGAGTPSACNDAAYRDKLLQTVATYVNDQGFAELARRYAHNLANARFLWRNRVGAEAVEVRINHIRQGEVARAWRFDALAIGLRDFKADAELDALAELIASGLSGSGHVLLEVVAFARIGDGQEVFPSQELILDKGDKKGQKSKTLYSVRDAAAIHSQKIGNALRTIDTWYPDEDGLGPIAVEPYGSVTSQGKAYRQPKQKLDFYTLLDNWVLRDEAPAVEQQHYVIANLIRGGVFGEAEEK
CRISPR-associated protein Csy3 H 344 Pseudomonas Aeruginosa , Pseudomonas Aeruginosa (Strain Ucbpp-Pa14) , Synthetic Construct MAMSKPILSTASVLAFERKLDPSDALMSAGAWAQRDASQEWPAVTVREKSVRGTISNRLKTKDRDPAKLDASIQSPNLQTVDVANLPSDADTLKVRFTLRVLGGAGTPSACNDAAYRDKLLQTVATYVNDQGFAELARRYAHNLANARFLWRNRVGAEAVEVRINHIRQGEVARAWRFDALAIGLRDFKADAELDALAELIASGLSGSGHVLLEVVAFARIGDGQEVFPSQELILDKGDKKGQKSKTLYSVRDAAAIHSQKIGNALRTIDTWYPDEDGLGPIAVEPYGSVTSQGKAYRQPKQKLDFYTLLDNWVLRDEAPAVEQQHYVIANLIRGGVFGEAEEK
CRISPR-associated endonuclease Cas6/Csy4 L 189 Pseudomonas Aeruginosa , Pseudomonas Aeruginosa (Strain Ucbpp-Pa14) , Synthetic Construct MAMDHYLDIRLRPDPEFPPAQLMSVLFGKLHQALVAQGGDRIGVSFPDLDESRSRLGERLRIHASADDLRALLARPWLEGLRDHLQFGEPAVVPHPTPYRQVSRVQAKSNPERLRRRLMRRHDLSEEEARKRIPDTVARALDLPFVTLRSQSTGQHFRLFIRHGPLQVTAEEGGFTCYGLSKGGFVPWF

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Pseudomonas aeruginosa strain SMC4485 CRISPR repeat sequence m 60 NA CUAAGAAAUUCACGGCGGGCUUGAUGUCCGCGUCUACCUGGUUCACUGCCGUGUAGGCAG
Target DNA strand (41-MER) n 49 NA CAGGTAGACGCGGACATCAAGCCCGCCGTGAAGGTGATGACTGCACAGA
Non-target DNA strand (5'-D(P*CP*AP*GP*TP*CP*AP*TP*CP*AP*CP*CP*AP*A)-3') o 27 NA TCTGTGCAGTCATCACCAATTTATTTA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-09-25
Deposition Author(s): Bartesaghi, A. , Earl, L. , Falconieri, V. , Fox, T. , Guo, T.W. , Merk, A. , Patel, D.J. , Rao, P. , Subramaniam, S. , Yang, H.