5ZZN
Crystal structure of photosystem ii from an sqdg-deficient mutant of thermosynechococcus elongatus
PDB DOI: 10.2210/pdb5zzn/pdb
Classification: ELECTRON TRANSPORT Organism(s): Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80
Deposited: 2018-06-03 Deposition Author(s): Akita, F. , Endo, K. , Kobayashi, K. , Nagao, R. , Nakajima, Y. , Noguchi, T. , Shen, J.R. , Suga, M. , Umena, Y. , Wada, H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.1 Å
Crystal structure of photosystem ii from an sqdg-deficient mutant of thermosynechococcus elongatus
Akita, F. , Endo, K. , Kobayashi, K. , Nagao, R. , Nakajima, Y. , Noguchi, T. , Shen, J.R. , Suga, M. , Umena, Y. , Wada, H.
Primary Citation of Related Structures: 5ZZN
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 1 | A | 334 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 37 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | KLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 36 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | EPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 34 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQK |
| Photosystem II manganese-stabilizing polypeptide | O | 243 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein T | T | 30 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | METITYVFIFACIIALFFFAIFFREPPRIT |
| Photosystem II 12 kDa extrinsic protein | U | 97 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | ELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 137 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | AELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein Ycf12 | Y | 29 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | VIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Photosystem II reaction center X protein | X | 39 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS |
| Photosystem II reaction center protein Z | Z | 62 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP47 reaction center protein | B | 505 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRR |
| Photosystem II CP43 reaction center protein | C | 455 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | NSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 342 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPXENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 81 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | TTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 34 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | SYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 63 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKA |
| Photosystem II reaction center protein I | I | 37 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDL |
| Photosystem II reaction center protein J | J | 40 | Citrobacter Braakii , Polytomella Sp. Pringsheim 198.80 | MMSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2018-06-03 Deposition Author(s): Akita, F. , Endo, K. , Kobayashi, K. , Nagao, R. , Nakajima, Y. , Noguchi, T. , Shen, J.R. , Suga, M. , Umena, Y. , Wada, H.