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FASTA Sequence PDB Format mmCIF Format
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5ZMD

Crystal structure of fto in complex with m6da modified ssdna

PDB DOI: 10.2210/pdb5zmd/pdb

Classification: OXIDOREDUCTASE/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2018-04-02
Deposition Author(s): Jia, G.F. , Liu, J. , Luo, J. , Wei, L.H. , Xiao, Y. , Zhang, L. , Zhang, W. , Zhang, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.3 Å

5zmd
Literature

Crystal structure of fto in complex with m6da modified ssdna

Jia, G.F. , Liu, J. , Luo, J. , Wei, L.H. , Xiao, Y. , Zhang, L. , Zhang, W. , Zhang, X.

Primary Citation of Related Structures: 5ZMD


Proteins
Molecule Chains Sequence Length Organism Sequence
Alpha-ketoglutarate-dependent dioxygenase FTO A 463 Homo Sapiens , Synthetic Construct EFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIKGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGSNIKHTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKANEDAVPLCMSADFPRVGMGSSYNGQDEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGPEEESEDDSHLEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHKHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQ
Alpha-ketoglutarate-dependent dioxygenase FTO C 463 Homo Sapiens , Synthetic Construct EFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIKGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGSNIKHTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKANEDAVPLCMSADFPRVGMGSSYNGQDEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGPEEESEDDSHLEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHKHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQ
Alpha-ketoglutarate-dependent dioxygenase FTO E 463 Homo Sapiens , Synthetic Construct EFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIKGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGSNIKHTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKANEDAVPLCMSADFPRVGMGSSYNGQDEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGPEEESEDDSHLEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHKHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQ
Alpha-ketoglutarate-dependent dioxygenase FTO G 463 Homo Sapiens , Synthetic Construct EFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIKGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGSNIKHTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKANEDAVPLCMSADFPRVGMGSSYNGQDEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGPEEESEDDSHLEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHKHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDDASMPLPFDLTDIVSELRGQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*CP*TP*(6MA)P*TP*AP*TP*CP*G)-3') b 9 NA TCTATATCG
DNA (5'-D(P*TP*CP*TP*(6MA)P*TP*AP*TP*CP*G)-3') d 9 NA TCTATATCG
DNA (5'-D(P*TP*CP*TP*(6MA)P*TP*AP*TP*CP*G)-3') f 9 NA TCTATATCG
DNA (5'-D(P*TP*CP*TP*(6MA)P*TP*AP*TP*CP*G)-3') h 9 NA TCTATATCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2018-04-02
Deposition Author(s): Jia, G.F. , Liu, J. , Luo, J. , Wei, L.H. , Xiao, Y. , Zhang, L. , Zhang, W. , Zhang, X.