5ZEU
M. smegmatis p/p state 30s ribosomal subunit
PDB DOI: 10.2210/pdb5zeu/pdb
Classification: RIBOSOME Organism(s): Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155)
Deposited: 2018-02-28 Deposition Author(s): Ahmed, T. , Bhushan, S. , Mishra, S. , Shi, J. , Tyagi, A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.7 Å
M. smegmatis p/p state 30s ribosomal subunit
Ahmed, T. , Bhushan, S. , Mishra, S. , Shi, J. , Tyagi, A.
Primary Citation of Related Structures: 5ZEU
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S rRNA | a | 1528 | NA | UUUUUGUUUGGAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCUUAACACAUGCAAGUCGAACGGAAAGGCCCUUUCGGGGGUACUCGAGUGGCGAACGGGUGAGUAACACGUGGGUGAUCUGCCCUGCACUUUGGGAUAAGCCUGGGAAACUGGGUCUAAUACCGAAUACACCCUGCUGGUCGCAUGGCCUGGUAGGGGAAAGCUUUUGCGGUGUGGGAUGGGCCCGCGGCCUAUCAGCUUGUUGGUGGGGUGAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGAUACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUCUUUCAGCACAGACGAAGCGCAAGUGACGGUAUGUGCAGAAGAAGGACCGGCCAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUCCGAGCGUUGUCCGGAAUUACUGGGCGUAAAGAGCUCGUAGGUGGUUUGUCGCGUUGUUCGUGAAAACUCACAGCUUAACUGUGGGCGUGCGGGCGAUACGGGCAGACUAGAGUACUGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGGAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCAGUAACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUACUAGGUGUGGGUUUCCUUCCUUGGGAUCCGUGCCGUAGCUAACGCAUUAAGUACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGUUUGACAUGCACAGGACGCCGGCAGAGAUGUCGGUUCCCUUGUGGCCUGUGUGCAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUCUCAUGUUGCCAGCACGUUAUGGUGGGGACUCGUGAGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCGAUGCCGUGAGGUGGAGCGAAUCCUUUCAAAGCCGGUCUCAGUUCGGAUCGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCAUGAAAGUCGGUAACACCCGAAGCCGGUGGCCUAACCCUUGUGGAGGGAGCCGUCGAAGGUGGGAUCGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAUCACCUCCUUUCU |
| P-tRNAfMet | v | 77 | NA | CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S15 | O | 89 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MALTAEQKKEILGQYGLHDTDTGSPEAQVALLTKRIQDLTEHLKVHKHDHHSRRGLLLLVGRRRRLLKYVAQVDVARYRSLIERLGLRR |
| 30S ribosomal protein S17 | Q | 98 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MADQKGPKYTPAAEKPRGRRKTAIGYVVSDKMQKTIVVELEDRKSHPLYGKIIRTTKKVKAHDENGEAGIGDRVSLMETRPLSATKRWRLVEILEKAK |
| 30S ribosomal protein S18 2 | R | 84 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MAKSNKRRPAPEKPVKTRKCVFCSKKGQTIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIAVAVKNAREVALLPFGSSTR |
| 30S ribosomal protein S19 | S | 93 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MPRSLKKGPFVDDHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTEAMVGHKLGEFAPTRTFKGHIKDDRKSKRR |
| 30S ribosomal protein S20 | T | 86 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MANIKSQIKRIRTNERRRLRNQSVKSSLRTAIRGFREAVDAGDKDKASELLHATSRKLDKAASKGVIHPNQAANKKSALALALNKL |
| 30S ribosomal protein S14 type Z | N | 61 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MAKKALVHKANKKPKFAVRAYTRCNKCGRPHSVYRKFGLCRICLREMAHAGELPGVQKSSW |
| 30S ribosomal protein S2 | B | 277 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MAVVTMKQLLDSGAHFGHQTRRWNPKMKRFIFTDRNGIYIIDLQQTLTYIDKAYEFVKETVAHGGTVLFVGTKKQAQESIAEEATRVGMPYVNQRWLGGMLTNFSTVHKRLQRLKELEAMEQTGGFEGRTKKEILMLTREKNKLERSLGGIRDMQKVPSAVWVVDTNKEHIAVGEARKLGIPVIAILDTNCDPDVVDYPIPGNDDAIRSAALLTKVIASAVAEGLQARAGQGSGEKPAEGAEPLAEWEQELLAGATAGAADASAEGAAAPESSTDAS |
| 30S ribosomal protein S4 | D | 201 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MARYTGPATRKSRRLGVDLVGGDQSFEKRPYPPGQHGRARIKESEYRQQLQEKQKARFSYGVMEKQFRRYYEEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGHFLVNGVKVDIPSYRVSQYDIIDVKEKSLNTLPFQIARETAGERPIPSWLQVVGERQRILVHQLPERAQIDVPLTEQLIVELYSK |
| 30S ribosomal protein S6 | F | 96 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIYAVIDVKAEPATVSELDRQLNLNESVLRTKVLRTDKH |
| 30S ribosomal protein S3 | C | 275 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MGQKINPHGFRLGITTEWKSRWYADKQYKDYVKEDVAIRKLLATGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPASDRPRRERPSGTRPRRSGSAGTTATSTEAGRAATSDAPAAGTAAAAEAPAESTES |
| 30S ribosomal protein S13 | M | 124 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MARLVGVDLPRDKRMEIALTYIYGIGRTRSNEILAATGIDKNMRTKDLTDDQVTVLRDYIEGNLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKKAR |
| 30S ribosomal protein S16 | P | 156 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MAVKIKLTRLGKIRNPQYRIIVADARTRRDGRAIEVIGRYHPKEEPSLIQIDSERAQYWLGVGAQPTEPVLALLKITGDWQKFKGLPGAEGTLKVKEPKPSKLDLFNAALAEAESGTTAAATTPKKKKAPKKDEAAEAPAEAAEAPAEAADAASES |
| Conserved domain protein | U | 33 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK |
| 30S ribosomal protein S5 | E | 214 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MAEQAGAGSAQDNRGGRGRRDDRGGRGRDGGDKSNYIERVVSINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIAKGVEEARKNFFRVPLIGSTITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRESEALAAAAAREGSA |
| 30S ribosomal protein S7 | G | 156 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MPRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLEGKKSLAERIVYGALEQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVNFSRQRREKTMVERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW |
| 30S ribosomal protein S8 | H | 132 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MTMTDPIADFLTRLRNANSAYHDEVTLPHSKLKANIAEILKREGYISDYRTEDARVGKSLVVQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW |
| 30S ribosomal protein S9 | I | 150 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MTDVTETEVVTESAEPREPVIIDRPIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR |
| 30S ribosomal protein S10 | J | 101 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MAGQKIRIRLKAYDHEAIDASARKIVETVTRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDALMRIDLPASVDVNIQ |
| 30S ribosomal protein S11 | K | 138 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MAQAKKGGTAAKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTISDVTPQPHNGCRPPKRRRV |
| 30S ribosomal protein S12 | L | 124 | Escherichia Coli , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) | MPTIQQLVRKGRRDKIAKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSQVEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYGAKKEKS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-02-28 Deposition Author(s): Ahmed, T. , Bhushan, S. , Mishra, S. , Shi, J. , Tyagi, A.