5ZCW
Structure of the methanosarcina mazei class ii cpd-photolyase in complex with intact, phosphodiester linked, cpd-lesion
PDB DOI: 10.2210/pdb5zcw/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): Methanosarcina Mazei , Synthetic Construct
Deposited: 2018-02-21 Deposition Author(s): Bessho, Y. , Maestre-Reyna, M.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.7 Å
Structure of the methanosarcina mazei class ii cpd-photolyase in complex with intact, phosphodiester linked, cpd-lesion
Bessho, Y. , Maestre-Reyna, M.
Primary Citation of Related Structures: 5ZCW
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Deoxyribodipyrimidine photolyase | A | 482 | Methanosarcina Mazei , Synthetic Construct | MGSSHHHHHHSSGLVPRGSHMNPKRIRALKSGKQGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGISIPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADRLDSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLEVEKAESNPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWAKKILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKLYIEKYSAL |
| Deoxyribodipyrimidine photolyase | B | 482 | Methanosarcina Mazei , Synthetic Construct | MGSSHHHHHHSSGLVPRGSHMNPKRIRALKSGKQGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGISIPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADRLDSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLEVEKAESNPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWAKKILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKLYIEKYSAL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*AP*TP*CP*GP*GP*CP*(TTD)P*CP*GP*CP*GP*CP*AP*A)-3' | c | 14 | NA | ATCGGCTCGCGCAA |
| 5'-D(*AP*TP*CP*GP*GP*CP*(TTD)P*CP*GP*CP*GP*CP*AP*A)-3' | e | 14 | NA | ATCGGCTCGCGCAA |
| 5'-D(*TP*GP*CP*GP*CP*GP*AP*AP*GP*CP*CP*GP*AP*T)-3' | d | 14 | NA | TGCGCGAAGCCGAT |
| 5'-D(*TP*GP*CP*GP*CP*GP*AP*AP*GP*CP*CP*GP*AP*T)-3' | f | 14 | NA | TGCGCGAAGCCGAT |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2018-02-21 Deposition Author(s): Bessho, Y. , Maestre-Reyna, M.