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FASTA Sequence PDB Format mmCIF Format
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5ZAP

Atomic structure of the herpes simplex virus type 2 b-capsid

PDB DOI: 10.2210/pdb5zap/pdb

Classification: VIRUS
Organism(s): Human Herpesvirus 2

Deposited: 2018-02-08
Deposition Author(s): Chen, W.Y. , Gao, Q. , Liu, H.R. , Rao, Z.H. , Tang, H. , Wang, J.L. , Wang, J.Z. , Wang, N. , Wang, X.X. , Yuan, S. , Zhang, X.Z. , Zhu, D.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

5zap
Literature

Atomic structure of the herpes simplex virus type 2 b-capsid

Chen, W.Y. , Gao, Q. , Liu, H.R. , Rao, Z.H. , Tang, H. , Wang, J.L. , Wang, J.Z. , Wang, N. , Wang, X.X. , Yuan, S. , Zhang, X.Z. , Zhu, D.J.

Primary Citation of Related Structures: 5ZAP


Proteins
Molecule Chains Sequence Length Organism Sequence
Small capsomere-interacting protein G 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Triplex capsid protein 2 A 318 Human Herpesvirus 2 MITDCFEADIAIPSGISRPDAAALQRCEGRVVFLPTIRRQLALADVAHESFVSGGVSPDTLGLLLAYRRRFPAVITRVLPTRIVACPVDLGLTHAGTVNLRNTSPVDLCNGDPVSLVPPVFEGQATDVRLESLDLTLRFPVPLPTPLAREIVARLVARGIRDLNPDPRTPGELPDLNVLYYNGARLSLVADVQQLASVNTELRSLVLNMVYSITEGTTLILTLIPRLLALSAQDGYVNALLQMQSVTREAAQLIHPEAPMLMQDGERRLPLYEALVAWLAHAGQLGDILALAPAVRVCTFDGAAVVQSGDMAPVIRYP
Triplex capsid protein 1 B 466 Human Herpesvirus 2 MKTKPLPTAPMAWAESAVETTTSPRELAGHAPLRRVLRPPIARRDGPVLLGDRAPRRTASTMWLLGIDPAESSPGTRATRDDTEQAVDKILRGARRAGGLTVPGAPRYHLTRQVTLTDLCQPNAERAGALLLALRHPTDLPHLARHRAPPGRQTERLAEAWGQLLEASALGSGRAESGCARAGLVSFNFLVAACTAAYDARDAAEAVRAHITTNYGGTRAGARLDRFSECLRAMVHTHVFPHEVMRFFGGLVSWVTQDELASVTAVCSGPQEATHTGHPGRPCSAVTIPACAFVDLDAELCLGGPGAAFLYLVFTYRQCRDQELCCVYVVKSQLPPRGLEAALERLFGRLRITNTIHGAEDMTPPPPNRNVDFPLAVLAASSQSPRCSASQVTNPQFVDRLYRWQPDLRGRPTARTCTYAAFAELGVMPDDSPRCLHRTERFGAVGVPVVILEGVVWRPGGWRACA
Triplex capsid protein 2 C 318 Human Herpesvirus 2 MITDCFEADIAIPSGISRPDAAALQRCEGRVVFLPTIRRQLALADVAHESFVSGGVSPDTLGLLLAYRRRFPAVITRVLPTRIVACPVDLGLTHAGTVNLRNTSPVDLCNGDPVSLVPPVFEGQATDVRLESLDLTLRFPVPLPTPLAREIVARLVARGIRDLNPDPRTPGELPDLNVLYYNGARLSLVADVQQLASVNTELRSLVLNMVYSITEGTTLILTLIPRLLALSAQDGYVNALLQMQSVTREAAQLIHPEAPMLMQDGERRLPLYEALVAWLAHAGQLGDILALAPAVRVCTFDGAAVVQSGDMAPVIRYP
Triplex capsid protein 2 D 318 Human Herpesvirus 2 MITDCFEADIAIPSGISRPDAAALQRCEGRVVFLPTIRRQLALADVAHESFVSGGVSPDTLGLLLAYRRRFPAVITRVLPTRIVACPVDLGLTHAGTVNLRNTSPVDLCNGDPVSLVPPVFEGQATDVRLESLDLTLRFPVPLPTPLAREIVARLVARGIRDLNPDPRTPGELPDLNVLYYNGARLSLVADVQQLASVNTELRSLVLNMVYSITEGTTLILTLIPRLLALSAQDGYVNALLQMQSVTREAAQLIHPEAPMLMQDGERRLPLYEALVAWLAHAGQLGDILALAPAVRVCTFDGAAVVQSGDMAPVIRYP
Triplex capsid protein 1 E 466 Human Herpesvirus 2 MKTKPLPTAPMAWAESAVETTTSPRELAGHAPLRRVLRPPIARRDGPVLLGDRAPRRTASTMWLLGIDPAESSPGTRATRDDTEQAVDKILRGARRAGGLTVPGAPRYHLTRQVTLTDLCQPNAERAGALLLALRHPTDLPHLARHRAPPGRQTERLAEAWGQLLEASALGSGRAESGCARAGLVSFNFLVAACTAAYDARDAAEAVRAHITTNYGGTRAGARLDRFSECLRAMVHTHVFPHEVMRFFGGLVSWVTQDELASVTAVCSGPQEATHTGHPGRPCSAVTIPACAFVDLDAELCLGGPGAAFLYLVFTYRQCRDQELCCVYVVKSQLPPRGLEAALERLFGRLRITNTIHGAEDMTPPPPNRNVDFPLAVLAASSQSPRCSASQVTNPQFVDRLYRWQPDLRGRPTARTCTYAAFAELGVMPDDSPRCLHRTERFGAVGVPVVILEGVVWRPGGWRACA
Small capsomere-interacting protein F 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein H 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein I 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein J 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein K 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein L 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein M 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein N 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein O 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein P 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein Q 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein R 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Small capsomere-interacting protein T 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Triplex capsid protein 2 U 318 Human Herpesvirus 2 MITDCFEADIAIPSGISRPDAAALQRCEGRVVFLPTIRRQLALADVAHESFVSGGVSPDTLGLLLAYRRRFPAVITRVLPTRIVACPVDLGLTHAGTVNLRNTSPVDLCNGDPVSLVPPVFEGQATDVRLESLDLTLRFPVPLPTPLAREIVARLVARGIRDLNPDPRTPGELPDLNVLYYNGARLSLVADVQQLASVNTELRSLVLNMVYSITEGTTLILTLIPRLLALSAQDGYVNALLQMQSVTREAAQLIHPEAPMLMQDGERRLPLYEALVAWLAHAGQLGDILALAPAVRVCTFDGAAVVQSGDMAPVIRYP
Triplex capsid protein 2 W 318 Human Herpesvirus 2 MITDCFEADIAIPSGISRPDAAALQRCEGRVVFLPTIRRQLALADVAHESFVSGGVSPDTLGLLLAYRRRFPAVITRVLPTRIVACPVDLGLTHAGTVNLRNTSPVDLCNGDPVSLVPPVFEGQATDVRLESLDLTLRFPVPLPTPLAREIVARLVARGIRDLNPDPRTPGELPDLNVLYYNGARLSLVADVQQLASVNTELRSLVLNMVYSITEGTTLILTLIPRLLALSAQDGYVNALLQMQSVTREAAQLIHPEAPMLMQDGERRLPLYEALVAWLAHAGQLGDILALAPAVRVCTFDGAAVVQSGDMAPVIRYP
Triplex capsid protein 2 X 318 Human Herpesvirus 2 MITDCFEADIAIPSGISRPDAAALQRCEGRVVFLPTIRRQLALADVAHESFVSGGVSPDTLGLLLAYRRRFPAVITRVLPTRIVACPVDLGLTHAGTVNLRNTSPVDLCNGDPVSLVPPVFEGQATDVRLESLDLTLRFPVPLPTPLAREIVARLVARGIRDLNPDPRTPGELPDLNVLYYNGARLSLVADVQQLASVNTELRSLVLNMVYSITEGTTLILTLIPRLLALSAQDGYVNALLQMQSVTREAAQLIHPEAPMLMQDGERRLPLYEALVAWLAHAGQLGDILALAPAVRVCTFDGAAVVQSGDMAPVIRYP
Triplex capsid protein 2 Z 318 Human Herpesvirus 2 MITDCFEADIAIPSGISRPDAAALQRCEGRVVFLPTIRRQLALADVAHESFVSGGVSPDTLGLLLAYRRRFPAVITRVLPTRIVACPVDLGLTHAGTVNLRNTSPVDLCNGDPVSLVPPVFEGQATDVRLESLDLTLRFPVPLPTPLAREIVARLVARGIRDLNPDPRTPGELPDLNVLYYNGARLSLVADVQQLASVNTELRSLVLNMVYSITEGTTLILTLIPRLLALSAQDGYVNALLQMQSVTREAAQLIHPEAPMLMQDGERRLPLYEALVAWLAHAGQLGDILALAPAVRVCTFDGAAVVQSGDMAPVIRYP
Small capsomere-interacting protein S 112 Human Herpesvirus 2 MAAPQFHRPSTITADNVRALGMRGLVLATNNAQFIMDNSYPHPHGTQGAVREFLRGQAAALTDLGVTHANNTFAPQPMFAGDAAAEWLRPSFGLKRTYSPFVVRDPKTPSTP
Triplex capsid protein 1 V 466 Human Herpesvirus 2 MKTKPLPTAPMAWAESAVETTTSPRELAGHAPLRRVLRPPIARRDGPVLLGDRAPRRTASTMWLLGIDPAESSPGTRATRDDTEQAVDKILRGARRAGGLTVPGAPRYHLTRQVTLTDLCQPNAERAGALLLALRHPTDLPHLARHRAPPGRQTERLAEAWGQLLEASALGSGRAESGCARAGLVSFNFLVAACTAAYDARDAAEAVRAHITTNYGGTRAGARLDRFSECLRAMVHTHVFPHEVMRFFGGLVSWVTQDELASVTAVCSGPQEATHTGHPGRPCSAVTIPACAFVDLDAELCLGGPGAAFLYLVFTYRQCRDQELCCVYVVKSQLPPRGLEAALERLFGRLRITNTIHGAEDMTPPPPNRNVDFPLAVLAASSQSPRCSASQVTNPQFVDRLYRWQPDLRGRPTARTCTYAAFAELGVMPDDSPRCLHRTERFGAVGVPVVILEGVVWRPGGWRACA
Triplex capsid protein 1 Y 466 Human Herpesvirus 2 MKTKPLPTAPMAWAESAVETTTSPRELAGHAPLRRVLRPPIARRDGPVLLGDRAPRRTASTMWLLGIDPAESSPGTRATRDDTEQAVDKILRGARRAGGLTVPGAPRYHLTRQVTLTDLCQPNAERAGALLLALRHPTDLPHLARHRAPPGRQTERLAEAWGQLLEASALGSGRAESGCARAGLVSFNFLVAACTAAYDARDAAEAVRAHITTNYGGTRAGARLDRFSECLRAMVHTHVFPHEVMRFFGGLVSWVTQDELASVTAVCSGPQEATHTGHPGRPCSAVTIPACAFVDLDAELCLGGPGAAFLYLVFTYRQCRDQELCCVYVVKSQLPPRGLEAALERLFGRLRITNTIHGAEDMTPPPPNRNVDFPLAVLAASSQSPRCSASQVTNPQFVDRLYRWQPDLRGRPTARTCTYAAFAELGVMPDDSPRCLHRTERFGAVGVPVVILEGVVWRPGGWRACA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-02-08
Deposition Author(s): Chen, W.Y. , Gao, Q. , Liu, H.R. , Rao, Z.H. , Tang, H. , Wang, J.L. , Wang, J.Z. , Wang, N. , Wang, X.X. , Yuan, S. , Zhang, X.Z. , Zhu, D.J.