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FASTA Sequence PDB Format mmCIF Format
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5YTD

Large fragment of dna polymerase i from thermus aquaticus in a closed ternary complex with the natural base pair 5fc:dgtp

PDB DOI: 10.2210/pdb5ytd/pdb

Classification: REPLICATION/DNA
Organism(s): Thermus Aquaticus , Synthetic Construct

Deposited: 2017-11-17
Deposition Author(s): Gao, Y.Q. , Mondal, M. , Song, R.Y. , Xia, B. , Yi, C.Q. , Zeng, H. , Zhang, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

5ytd
Literature

Large fragment of dna polymerase i from thermus aquaticus in a closed ternary complex with the natural base pair 5fc:dgtp

Gao, Y.Q. , Mondal, M. , Song, R.Y. , Xia, B. , Yi, C.Q. , Zeng, H. , Zhang, J.

Primary Citation of Related Structures: 5YTD


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase I, thermostable A 539 Thermus Aquaticus , Synthetic Construct LEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') b 12 NA GACCACGGCGCC
DNA (5'-D(*AP*AP*AP*(5FC)P*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3') c 16 NA AAACGGCGCCGTGGTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-11-17
Deposition Author(s): Gao, Y.Q. , Mondal, M. , Song, R.Y. , Xia, B. , Yi, C.Q. , Zeng, H. , Zhang, J.