PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5YMW

Crystal structure of 8-mer peptide from rous sarcoma virus in complex with bf2*1201

PDB DOI: 10.2210/pdb5ymw/pdb

Classification: IMMUNE SYSTEM
Organism(s): Gallus Gallus , Synthetic Construct

Deposited: 2017-10-22
Deposition Author(s): Chai, Y. , Gao, G.F. , Liu, W.J. , Qi, J. , Xiang, W. , Xiao, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.997 Å

5ymw
Literature

Crystal structure of 8-mer peptide from rous sarcoma virus in complex with bf2*1201

Chai, Y. , Gao, G.F. , Liu, W.J. , Qi, J. , Xiang, W. , Xiao, J.

Primary Citation of Related Structures: 5YMW


Proteins
Molecule Chains Sequence Length Organism Sequence
Class I histocompatibility antigen, F10 alpha chain A 271 Gallus Gallus , Synthetic Construct MELHTLRYIQTAMTDPGPGQPWFVTVGYVDGELFVHYNSTARRYVPRTEWIAAKADQQYWDGQTQIGQGNEQIDRENLGILQRRYNQTGGSHTVQWMYGCDILEGGPIRGYYQMAYDGRDFTAFDKGTMTFTAAVPEAVPTKRKWEEESEPERWKNYLEETCVEWLRRYVEYGKAELGRRERPEVRVWGKEADGILTLSCRAHGFYPRPIVVSWLKDGAVRGQDAHSGGIVPNGDGTYHTWVTIDAQPGDGDKYQCRVEHASLPQPGLYSW
Class I histocompatibility antigen, F10 alpha chain D 271 Gallus Gallus , Synthetic Construct MELHTLRYIQTAMTDPGPGQPWFVTVGYVDGELFVHYNSTARRYVPRTEWIAAKADQQYWDGQTQIGQGNEQIDRENLGILQRRYNQTGGSHTVQWMYGCDILEGGPIRGYYQMAYDGRDFTAFDKGTMTFTAAVPEAVPTKRKWEEESEPERWKNYLEETCVEWLRRYVEYGKAELGRRERPEVRVWGKEADGILTLSCRAHGFYPRPIVVSWLKDGAVRGQDAHSGGIVPNGDGTYHTWVTIDAQPGDGDKYQCRVEHASLPQPGLYSW
Class I histocompatibility antigen, F10 alpha chain G 271 Gallus Gallus , Synthetic Construct MELHTLRYIQTAMTDPGPGQPWFVTVGYVDGELFVHYNSTARRYVPRTEWIAAKADQQYWDGQTQIGQGNEQIDRENLGILQRRYNQTGGSHTVQWMYGCDILEGGPIRGYYQMAYDGRDFTAFDKGTMTFTAAVPEAVPTKRKWEEESEPERWKNYLEETCVEWLRRYVEYGKAELGRRERPEVRVWGKEADGILTLSCRAHGFYPRPIVVSWLKDGAVRGQDAHSGGIVPNGDGTYHTWVTIDAQPGDGDKYQCRVEHASLPQPGLYSW
Class I histocompatibility antigen, F10 alpha chain J 271 Gallus Gallus , Synthetic Construct MELHTLRYIQTAMTDPGPGQPWFVTVGYVDGELFVHYNSTARRYVPRTEWIAAKADQQYWDGQTQIGQGNEQIDRENLGILQRRYNQTGGSHTVQWMYGCDILEGGPIRGYYQMAYDGRDFTAFDKGTMTFTAAVPEAVPTKRKWEEESEPERWKNYLEETCVEWLRRYVEYGKAELGRRERPEVRVWGKEADGILTLSCRAHGFYPRPIVVSWLKDGAVRGQDAHSGGIVPNGDGTYHTWVTIDAQPGDGDKYQCRVEHASLPQPGLYSW
Beta-2-microglobulin B 98 Gallus Gallus , Synthetic Construct DLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSGSTYACKVEHETLKEPQVYKWDPEF
Beta-2-microglobulin E 98 Gallus Gallus , Synthetic Construct DLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSGSTYACKVEHETLKEPQVYKWDPEF
Beta-2-microglobulin H 98 Gallus Gallus , Synthetic Construct DLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSGSTYACKVEHETLKEPQVYKWDPEF
Beta-2-microglobulin K 98 Gallus Gallus , Synthetic Construct DLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSGSTYACKVEHETLKEPQVYKWDPEF
LEU-PRO-ALA-CYS-VAL-LEU-GLU-VAL C 8 Gallus Gallus , Synthetic Construct LPACVLEV
LEU-PRO-ALA-CYS-VAL-LEU-GLU-VAL F 8 Gallus Gallus , Synthetic Construct LPACVLEV
LEU-PRO-ALA-CYS-VAL-LEU-GLU-VAL I 8 Gallus Gallus , Synthetic Construct LPACVLEV
LEU-PRO-ALA-CYS-VAL-LEU-GLU-VAL L 8 Gallus Gallus , Synthetic Construct LPACVLEV
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-10-22
Deposition Author(s): Chai, Y. , Gao, G.F. , Liu, W.J. , Qi, J. , Xiang, W. , Xiao, J.