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5YMS

Structural basis of glycan specificity and identification of a novel glycan binding cavity in human p[19] rotavirus

PDB DOI: 10.2210/pdb5yms/pdb

Classification: VIRAL PROTEIN
Organism(s): Human Rotavirus A

Deposited: 2017-10-22
Deposition Author(s): Dandi, L. , Duan, Z. , Sun, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.1 Å

5yms
Literature

Structural basis of glycan specificity and identification of a novel glycan binding cavity in human p[19] rotavirus

Dandi, L. , Duan, Z. , Sun, X.

Primary Citation of Related Structures: 5YMS


Proteins
Molecule Chains Sequence Length Organism Sequence
Outer capsid protein VP4 A 161 Human Rotavirus A MVLDGPYQPVAFKPPNDYWILVNSNSNGVVLEGTNNTDVWVAIISIEPNVNSESRQYSLFGVNKQITVVNTSNKWKFMEMFRNNSNAEFQHKRTLTSSTKLVGILKHGGRLWTYHGETPNATTDYSTTSNLNEISVTTYAEFYIIPRSQESKCTEYINTGL
Outer capsid protein VP4 B 161 Human Rotavirus A MVLDGPYQPVAFKPPNDYWILVNSNSNGVVLEGTNNTDVWVAIISIEPNVNSESRQYSLFGVNKQITVVNTSNKWKFMEMFRNNSNAEFQHKRTLTSSTKLVGILKHGGRLWTYHGETPNATTDYSTTSNLNEISVTTYAEFYIIPRSQESKCTEYINTGL
Outer capsid protein VP4 C 161 Human Rotavirus A MVLDGPYQPVAFKPPNDYWILVNSNSNGVVLEGTNNTDVWVAIISIEPNVNSESRQYSLFGVNKQITVVNTSNKWKFMEMFRNNSNAEFQHKRTLTSSTKLVGILKHGGRLWTYHGETPNATTDYSTTSNLNEISVTTYAEFYIIPRSQESKCTEYINTGL
Outer capsid protein VP4 D 161 Human Rotavirus A MVLDGPYQPVAFKPPNDYWILVNSNSNGVVLEGTNNTDVWVAIISIEPNVNSESRQYSLFGVNKQITVVNTSNKWKFMEMFRNNSNAEFQHKRTLTSSTKLVGILKHGGRLWTYHGETPNATTDYSTTSNLNEISVTTYAEFYIIPRSQESKCTEYINTGL
Outer capsid protein VP4 E 161 Human Rotavirus A MVLDGPYQPVAFKPPNDYWILVNSNSNGVVLEGTNNTDVWVAIISIEPNVNSESRQYSLFGVNKQITVVNTSNKWKFMEMFRNNSNAEFQHKRTLTSSTKLVGILKHGGRLWTYHGETPNATTDYSTTSNLNEISVTTYAEFYIIPRSQESKCTEYINTGL
Outer capsid protein VP4 F 161 Human Rotavirus A MVLDGPYQPVAFKPPNDYWILVNSNSNGVVLEGTNNTDVWVAIISIEPNVNSESRQYSLFGVNKQITVVNTSNKWKFMEMFRNNSNAEFQHKRTLTSSTKLVGILKHGGRLWTYHGETPNATTDYSTTSNLNEISVTTYAEFYIIPRSQESKCTEYINTGL
Outer capsid protein VP4 G 161 Human Rotavirus A MVLDGPYQPVAFKPPNDYWILVNSNSNGVVLEGTNNTDVWVAIISIEPNVNSESRQYSLFGVNKQITVVNTSNKWKFMEMFRNNSNAEFQHKRTLTSSTKLVGILKHGGRLWTYHGETPNATTDYSTTSNLNEISVTTYAEFYIIPRSQESKCTEYINTGL
Outer capsid protein VP4 H 161 Human Rotavirus A MVLDGPYQPVAFKPPNDYWILVNSNSNGVVLEGTNNTDVWVAIISIEPNVNSESRQYSLFGVNKQITVVNTSNKWKFMEMFRNNSNAEFQHKRTLTSSTKLVGILKHGGRLWTYHGETPNATTDYSTTSNLNEISVTTYAEFYIIPRSQESKCTEYINTGL
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-10-22
Deposition Author(s): Dandi, L. , Duan, Z. , Sun, X.