5YBB
Structural basis underlying complex assembly andconformational transition of the type i r-m system
PDB DOI: 10.2210/pdb5ybb/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): Methanococcus Maripaludis (Strain C5 / Atcc Baa-1333) , Lycium Barbarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2017-09-04 Deposition Author(s): Gao, P. , Liu, Y.P. , Tang, Q. , Tian, L.F. , Yan, X.X. , Zhang, J.Z.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.2 Å
Structural basis underlying complex assembly andconformational transition of the type i r-m system
Gao, P. , Liu, Y.P. , Tang, Q. , Tian, L.F. , Yan, X.X. , Zhang, J.Z.
Primary Citation of Related Structures: 5YBB
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Type I restriction-modification system methyltransferase subunit | A | 507 | Methanococcus Maripaludis (Strain C5 / Atcc Baa-1333) , Lycium Barbarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MNGPQTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEEEWEAQAQIAGRPYTPIIDSEYRWRHWATKDWPADELLAFVHGRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQDDIFTVSQVYEELLRRLGNENRLAGEFYTPRPVVRFVVELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNFPIQSNATELLFLQHIMKKLKPRDGARCGMVVPEGTLFRGGAFAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFERPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEEARKLWRGWDAYRKGLGPVEACLSERSWIVPVEEVKKRGYDLTARNPNRSGGEELPSPVEIVAGLLEKEREILSIMEELSELLENEKGNSSRKNDEEEE |
| Type I restriction-modification system methyltransferase subunit | C | 507 | Methanococcus Maripaludis (Strain C5 / Atcc Baa-1333) , Lycium Barbarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MNGPQTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEEEWEAQAQIAGRPYTPIIDSEYRWRHWATKDWPADELLAFVHGRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQDDIFTVSQVYEELLRRLGNENRLAGEFYTPRPVVRFVVELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNFPIQSNATELLFLQHIMKKLKPRDGARCGMVVPEGTLFRGGAFAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFERPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEEARKLWRGWDAYRKGLGPVEACLSERSWIVPVEEVKKRGYDLTARNPNRSGGEELPSPVEIVAGLLEKEREILSIMEELSELLENEKGNSSRKNDEEEE |
| Type I restriction-modification system methyltransferase subunit | B | 507 | Methanococcus Maripaludis (Strain C5 / Atcc Baa-1333) , Lycium Barbarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MNGPQTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEEEWEAQAQIAGRPYTPIIDSEYRWRHWATKDWPADELLAFVHGRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQDDIFTVSQVYEELLRRLGNENRLAGEFYTPRPVVRFVVELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNFPIQSNATELLFLQHIMKKLKPRDGARCGMVVPEGTLFRGGAFAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFERPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEEARKLWRGWDAYRKGLGPVEACLSERSWIVPVEEVKKRGYDLTARNPNRSGGEELPSPVEIVAGLLEKEREILSIMEELSELLENEKGNSSRKNDEEEE |
| Type I restriction-modification system methyltransferase subunit | E | 507 | Methanococcus Maripaludis (Strain C5 / Atcc Baa-1333) , Lycium Barbarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MNGPQTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEEEWEAQAQIAGRPYTPIIDSEYRWRHWATKDWPADELLAFVHGRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQDDIFTVSQVYEELLRRLGNENRLAGEFYTPRPVVRFVVELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNFPIQSNATELLFLQHIMKKLKPRDGARCGMVVPEGTLFRGGAFAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFERPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEEARKLWRGWDAYRKGLGPVEACLSERSWIVPVEEVKKRGYDLTARNPNRSGGEELPSPVEIVAGLLEKEREILSIMEELSELLENEKGNSSRKNDEEEE |
| Restriction endonuclease S subunits | D | 398 | Methanococcus Maripaludis (Strain C5 / Atcc Baa-1333) , Lycium Barbarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | VTEGPYKLPPGWRWVRLGEVCLPTERRDPTKNPSTYFVYVDISAIDSTVGKIVSPKEILGQHAPSRARKVIRSGDVIFATTRPYLKNIALVPPDLDGQICSTGFCVIRANREFAEPEFLFHLCRSDFITNQLTASKMRGTSYPAVTDNDVYNTLIPLPPLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQTALAEVFPHPGADLPPGWRWVRLGEVCDIIMGQSPPSSTYNFEGNGLPFFQGKADFGDLHPTPRIWCSAPQKVARPGDVLISVRAPVGSTNVANLACCIGRGLAALRPRDSLERFWLLYYLHYLEPELSKMGAGSTFNAITKKDLQNVFIPLPPLEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDKAFRGDL |
| Restriction endonuclease S subunits | G | 398 | Methanococcus Maripaludis (Strain C5 / Atcc Baa-1333) , Lycium Barbarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | VTEGPYKLPPGWRWVRLGEVCLPTERRDPTKNPSTYFVYVDISAIDSTVGKIVSPKEILGQHAPSRARKVIRSGDVIFATTRPYLKNIALVPPDLDGQICSTGFCVIRANREFAEPEFLFHLCRSDFITNQLTASKMRGTSYPAVTDNDVYNTLIPLPPLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQTALAEVFPHPGADLPPGWRWVRLGEVCDIIMGQSPPSSTYNFEGNGLPFFQGKADFGDLHPTPRIWCSAPQKVARPGDVLISVRAPVGSTNVANLACCIGRGLAALRPRDSLERFWLLYYLHYLEPELSKMGAGSTFNAITKKDLQNVFIPLPPLEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDKAFRGDL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2017-09-04 Deposition Author(s): Gao, P. , Liu, Y.P. , Tang, Q. , Tian, L.F. , Yan, X.X. , Zhang, J.Z.