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FASTA Sequence PDB Format mmCIF Format
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5YBB

Structural basis underlying complex assembly andconformational transition of the type i r-m system

PDB DOI: 10.2210/pdb5ybb/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Caldanaerobacter Subterraneus Subsp. Tengcongensis , Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Synthetic Construct

Deposited: 2017-09-04
Deposition Author(s): Gao, P. , Liu, Y.P. , Tang, Q. , Tian, L.F. , Yan, X.X. , Zhang, J.Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.2 Å

5ybb
Literature

Structural basis underlying complex assembly andconformational transition of the type i r-m system

Gao, P. , Liu, Y.P. , Tang, Q. , Tian, L.F. , Yan, X.X. , Zhang, J.Z.

Primary Citation of Related Structures: 5YBB


Proteins
Molecule Chains Sequence Length Organism Sequence
Type I restriction-modification system methyltransferase subunit A 507 Caldanaerobacter Subterraneus Subsp. Tengcongensis , Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Synthetic Construct MNGPQTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEEEWEAQAQIAGRPYTPIIDSEYRWRHWATKDWPADELLAFVHGRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQDDIFTVSQVYEELLRRLGNENRLAGEFYTPRPVVRFVVELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNFPIQSNATELLFLQHIMKKLKPRDGARCGMVVPEGTLFRGGAFAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFERPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEEARKLWRGWDAYRKGLGPVEACLSERSWIVPVEEVKKRGYDLTARNPNRSGGEELPSPVEIVAGLLEKEREILSIMEELSELLENEKGNSSRKNDEEEE
Type I restriction-modification system methyltransferase subunit C 507 Caldanaerobacter Subterraneus Subsp. Tengcongensis , Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Synthetic Construct MNGPQTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEEEWEAQAQIAGRPYTPIIDSEYRWRHWATKDWPADELLAFVHGRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQDDIFTVSQVYEELLRRLGNENRLAGEFYTPRPVVRFVVELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNFPIQSNATELLFLQHIMKKLKPRDGARCGMVVPEGTLFRGGAFAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFERPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEEARKLWRGWDAYRKGLGPVEACLSERSWIVPVEEVKKRGYDLTARNPNRSGGEELPSPVEIVAGLLEKEREILSIMEELSELLENEKGNSSRKNDEEEE
Type I restriction-modification system methyltransferase subunit B 507 Caldanaerobacter Subterraneus Subsp. Tengcongensis , Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Synthetic Construct MNGPQTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEEEWEAQAQIAGRPYTPIIDSEYRWRHWATKDWPADELLAFVHGRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQDDIFTVSQVYEELLRRLGNENRLAGEFYTPRPVVRFVVELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNFPIQSNATELLFLQHIMKKLKPRDGARCGMVVPEGTLFRGGAFAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFERPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEEARKLWRGWDAYRKGLGPVEACLSERSWIVPVEEVKKRGYDLTARNPNRSGGEELPSPVEIVAGLLEKEREILSIMEELSELLENEKGNSSRKNDEEEE
Type I restriction-modification system methyltransferase subunit E 507 Caldanaerobacter Subterraneus Subsp. Tengcongensis , Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Synthetic Construct MNGPQTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEEEWEAQAQIAGRPYTPIIDSEYRWRHWATKDWPADELLAFVHGRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQDDIFTVSQVYEELLRRLGNENRLAGEFYTPRPVVRFVVELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNFPIQSNATELLFLQHIMKKLKPRDGARCGMVVPEGTLFRGGAFAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFERPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEEARKLWRGWDAYRKGLGPVEACLSERSWIVPVEEVKKRGYDLTARNPNRSGGEELPSPVEIVAGLLEKEREILSIMEELSELLENEKGNSSRKNDEEEE
Restriction endonuclease S subunits D 398 Caldanaerobacter Subterraneus Subsp. Tengcongensis , Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Synthetic Construct VTEGPYKLPPGWRWVRLGEVCLPTERRDPTKNPSTYFVYVDISAIDSTVGKIVSPKEILGQHAPSRARKVIRSGDVIFATTRPYLKNIALVPPDLDGQICSTGFCVIRANREFAEPEFLFHLCRSDFITNQLTASKMRGTSYPAVTDNDVYNTLIPLPPLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQTALAEVFPHPGADLPPGWRWVRLGEVCDIIMGQSPPSSTYNFEGNGLPFFQGKADFGDLHPTPRIWCSAPQKVARPGDVLISVRAPVGSTNVANLACCIGRGLAALRPRDSLERFWLLYYLHYLEPELSKMGAGSTFNAITKKDLQNVFIPLPPLEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDKAFRGDL
Restriction endonuclease S subunits G 398 Caldanaerobacter Subterraneus Subsp. Tengcongensis , Caldanaerobacter Subterraneus Subsp. Tengcongensis (Strain Dsm 15242 / Jcm 11007 / Nbrc 100824 / Mb4) , Synthetic Construct VTEGPYKLPPGWRWVRLGEVCLPTERRDPTKNPSTYFVYVDISAIDSTVGKIVSPKEILGQHAPSRARKVIRSGDVIFATTRPYLKNIALVPPDLDGQICSTGFCVIRANREFAEPEFLFHLCRSDFITNQLTASKMRGTSYPAVTDNDVYNTLIPLPPLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQTALAEVFPHPGADLPPGWRWVRLGEVCDIIMGQSPPSSTYNFEGNGLPFFQGKADFGDLHPTPRIWCSAPQKVARPGDVLISVRAPVGSTNVANLACCIGRGLAALRPRDSLERFWLLYYLHYLEPELSKMGAGSTFNAITKKDLQNVFIPLPPLEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDKAFRGDL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA h 22 NA CTGCGAGGTCAAGGTCACGTGG
DNA i 22 NA CACGTGACCTTGACCTCGCAGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-09-04
Deposition Author(s): Gao, P. , Liu, Y.P. , Tang, Q. , Tian, L.F. , Yan, X.X. , Zhang, J.Z.