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FASTA Sequence PDB Format mmCIF Format
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5Y2M

Crystal structure of a group 2 ha binding antibody af4h1k1 fab in complex with the h4n6 duck isolate (h4-cz/56) hemagglutinin

PDB DOI: 10.2210/pdb5y2m/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6)

Deposited: 2017-07-26
Deposition Author(s): Gao, F.G. , Qi, J. , Xiao, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.8 Å

5y2m
Literature

Crystal structure of a group 2 ha binding antibody af4h1k1 fab in complex with the h4n6 duck isolate (h4-cz/56) hemagglutinin

Gao, F.G. , Qi, J. , Xiao, H.

Primary Citation of Related Structures: 5Y2M


Proteins
Molecule Chains Sequence Length Organism Sequence
Hemagglutinin A 327 Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6) QNYTGNPVICMGHHAVANGTMVKTLADDQVEVVTAQELVESQNLPELCPSPLRLVDGQTCDIINGALGSPGCDHLNGAEWDVFIERPNAVDTCYPFDVPEYQSLRSILANNGKFEFIAEEFQWNTVKQNGKSGACKRANVNDFFNRLNWLVKSDGNAYPLQNLTKINNGDYARLYIWGVHHPSTDTEQTNLYKNNPGGVTVSTKTSQTSVVPNIGSRPLVRGQSGRVSFYWTIVEPGDLIVFNTIGNLIAPRGHYKLNNQKKSTILNTAIPIGSCVSKCHTDKGSLSTTKPFQNISRIAVGDCPRYVKQGSLKLATGMRNIPEKASR
Hemagglutinin B 327 Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6) QNYTGNPVICMGHHAVANGTMVKTLADDQVEVVTAQELVESQNLPELCPSPLRLVDGQTCDIINGALGSPGCDHLNGAEWDVFIERPNAVDTCYPFDVPEYQSLRSILANNGKFEFIAEEFQWNTVKQNGKSGACKRANVNDFFNRLNWLVKSDGNAYPLQNLTKINNGDYARLYIWGVHHPSTDTEQTNLYKNNPGGVTVSTKTSQTSVVPNIGSRPLVRGQSGRVSFYWTIVEPGDLIVFNTIGNLIAPRGHYKLNNQKKSTILNTAIPIGSCVSKCHTDKGSLSTTKPFQNISRIAVGDCPRYVKQGSLKLATGMRNIPEKASR
Hemagglutinin C 327 Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6) QNYTGNPVICMGHHAVANGTMVKTLADDQVEVVTAQELVESQNLPELCPSPLRLVDGQTCDIINGALGSPGCDHLNGAEWDVFIERPNAVDTCYPFDVPEYQSLRSILANNGKFEFIAEEFQWNTVKQNGKSGACKRANVNDFFNRLNWLVKSDGNAYPLQNLTKINNGDYARLYIWGVHHPSTDTEQTNLYKNNPGGVTVSTKTSQTSVVPNIGSRPLVRGQSGRVSFYWTIVEPGDLIVFNTIGNLIAPRGHYKLNNQKKSTILNTAIPIGSCVSKCHTDKGSLSTTKPFQNISRIAVGDCPRYVKQGSLKLATGMRNIPEKASR
Hemagglutinin D 176 Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6) GLFGAIAGFIENGWQGLIDGWYGFRHQNAEGTGTAADLKSTQAAIDQINGKLNRLIEKTNDKYHQIEKEFEQVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDVTDSEMNKLFERVRRQLRENAEDKGNGCFEIFHKCDNNCIESIRNGTYDHDIYRDEAINNRFQIQGV
Hemagglutinin E 176 Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6) GLFGAIAGFIENGWQGLIDGWYGFRHQNAEGTGTAADLKSTQAAIDQINGKLNRLIEKTNDKYHQIEKEFEQVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDVTDSEMNKLFERVRRQLRENAEDKGNGCFEIFHKCDNNCIESIRNGTYDHDIYRDEAINNRFQIQGV
Hemagglutinin F 176 Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6) GLFGAIAGFIENGWQGLIDGWYGFRHQNAEGTGTAADLKSTQAAIDQINGKLNRLIEKTNDKYHQIEKEFEQVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDVTDSEMNKLFERVRRQLRENAEDKGNGCFEIFHKCDNNCIESIRNGTYDHDIYRDEAINNRFQIQGV
a group 2 HA binding antibody AF4H1K1 Fab heavy chain I 233 Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6) QVQLVESGGGVVQPGTSLRLSCEASGFTSSAYAMHWVRQAPGKGLEWVAVITFDGGYQYYADSVKGRFTISRDISRNTLHLHMNSLRAEDTAVYYCARDPLTKLLPFDWVSGGYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
a group 2 HA binding antibody AF4H1K1 Fab heavy chain K 233 Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6) QVQLVESGGGVVQPGTSLRLSCEASGFTSSAYAMHWVRQAPGKGLEWVAVITFDGGYQYYADSVKGRFTISRDISRNTLHLHMNSLRAEDTAVYYCARDPLTKLLPFDWVSGGYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
a group 2 HA binding antibody AF4H1K1 Fab light chain J 220 Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6) DIVMTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYRASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSFTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECHHHHHH
a group 2 HA binding antibody AF4H1K1 Fab light chain L 220 Homo Sapiens , Influenza A Virus (Strain A/Duck/Czechoslovakia/1956 H4N6) DIVMTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYRASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSFTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-07-26
Deposition Author(s): Gao, F.G. , Qi, J. , Xiao, H.