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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5XYI

Small subunit of trichomonas vaginalis ribosome

PDB DOI: 10.2210/pdb5xyi/pdb

Classification: RIBOSOME
Organism(s): Trichomonas Vaginalis

Deposited: 2017-07-08
Deposition Author(s): Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.35 Å

Literature

Small subunit of trichomonas vaginalis ribosome

Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.

Primary Citation of Related Structures: 5XYI


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
18S 2 1577 NA ACUUGGUUGAUCCUGCCAAGGAAGCACACUUAGGUCAUAGAUUAAGCCAUGCAAGUGUUAGUUCAGGUAACGAAACUGCGAAUAGCUCAUUAAUACGCUCAGAAUCUAUUUGGCGGCGACCAACAGGUCUUAAAUGGAUAGCAGCAGCAACUCUGGUGCUAAUACAUGCGAUUGUUUCUCCAGAUGUGAAUUAUGGAGGAAAAGUUGACCUCAUCAGAGGCACGCCAUUCGACUGAGUGACCUAUCAGCUUGUACUUAGGGUCUUUACCUAGGUAGGCUAUCACGGGUAACGGGCGGUUACCGUCGGACUGCCGGAGAAGGCGCCUGAGAGAUAGCGACUAUAUCCACGGGUAGCAGCAGGCGCGAAACUUUCCCACUCGAGACUUUCGGAGGAGGUAAUGACCAGUUCCAUUGGUGCCUUUUGGUACUGUGGAUAGGGGUACGGUUUUCCACCGUACCGAAACCUAGCAGAGGGCCAGUCUGGUGCCAGCAGCUGCGGUAAUUCCAGCUCUGCGAGUUUGCUCCCAUAUUGUUGCAGUUAAAACGCCCGUAGUCUGAAUUGGCCAGCAAUGGUCGUACGUAUUUUUACGUUCACUGUGAACAAAUCAGGACGCUUAGAGUAUGGCCACAUGAAUGACUCAGCGCAGUAUGAAGUCUUUGUUUUCUUCCGAAAACAAGCUCAAUGAGAGCCAUCGGGGGUAGAUCUAUCUCAUGACGAGUGGUGGAAUACUUUGACUCAUGAGAGAGAAGCUGAGGCGAAGGCGUCUACCUAGAGGGUUUCUGUCGAUCAAGGGCGAGAGUAGGAGUAUCCAACAGGAUUAGAGACCCUGGUAGUUCCUACCUUAAACGAUGCCGACAGGAGUUUGUCAUUUGUUAAUGGCAGAAUCUUUGGAGAAAUCAUAGUUCUUGGGCUCUGGGGGAAAUACGACCGCAAGGCUGAAACUUGAAGGAAUUGACGGAAGGGCACACCAGGGGUGGAGCCUGUGGCUUAAUUUGAAUCAACACGGGGAAACUACCCAGGACCAGAUGUUUUUUAUGACUGACAGGCUUCGGGUCUUUCAGGAUAUUGUUUUUGGUGGUGCAUGGCCGUUGGUGGUGCGUGGGUUGACCUGUCUAGCGUUGAUUCAGCUAACGAGCGAGAUUAUCGCCAAUUAUUUACUUUGCCGAAGUCCUUCGGUUAAAGUUCUAAUUGGGACUCCCUGCGAUUUUAGCAGGUGGAAGAGGGUAGCAAUAACAGGUCCGUGAUGCCCUUUAGAUGCUCUGGGCUGCACGCGUGCUACAAUGUUAGGAUCAAUAGGACUGCGAGCCUGAGAGGGUGCGCUACUCUUAUAAUCCCUAACGUAGUUGGGAUUGACGUUUGUAAUCAGCGUCAUGAACCAGGAAUCCCUUGUAAAUGUGUGUCAACAACGCACGUUGAAUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUCCUACCGAUUGGAUGACUCGGUGAAAUCACCGGAUGCUUACGAGCAGAAAGUGAUUAAAUCACGUUAUCUAGAGGAAGGAGAAGUCGUAACAAGGUAACGGUAGGUGAACCUGCCGUUGGAUCA

Proteins
Molecule Chains Sequence Length Organism Sequence
40S ribosomal protein S8 I 197 Trichomonas Vaginalis MGITRMGDLKHTKSGARQVAWRKKRNFLAGRPSAQTRIGEKRIHAVRVRGGNLKMRALRLETGTFAWASENCTRKTRILNVTYHPADNDLVRTNTLARGSVVSIDAAPFKQWYERQFGKALGKSQYVKPEKVTDKMTQRWAANKDGGVVAPELVAEFDQGRLLAVITSRPGQCGRADGYILEGEELAFYSDKIAKKK
Uncharacterized protein J 185 Trichomonas Vaginalis MSSRNFSRTFKKPMRPYEKERMHKELQVVGEYGLKNKREIWRVSYTLSKIRHAARELLTLPENDSKRIFEGAALLRRLTKLGVLDESKQKLDYVLSLTVNDLMDRRLQTQVHKRALANSVHHARTLVSHRHISVENQLVNQPAFLVWKESEKNIKYADTSVMTTEKLGRKKRMRAHAQTKKADEE
Plectin/S10 domain containing protein K 141 Trichomonas Vaginalis MYMPTAIRRRILRCLFENGVLCVSDIQSGTHEELDCLNIYPYQIGRAFVTKGFCIKTYAWSHAYYTLTDKGIEYLRNYFGLPANAAPATLREAEAKVLETRRDRPQGRGPRRFGNGPRGDRPQRGGFRGPRREQAEQPQQE
Uncharacterized protein L 155 Trichomonas Vaginalis MSTVQTERAFQKQPQLFLASKKHANAEKKQRYVKSIGLKIETPKTAEEREYIDAKCPFTGTVSIRGRVLRGVVVSTKMRRTIIIRRDYLQWIRKYKRFEKRHTKIPAHISPAFLVKEGDLVTVAECRPLSKTVHFNVIHVKPAAVGADKRQFRVF
Ribosomal protein L7Ae, putative M 124 Trichomonas Vaginalis METVIEHGLHQINLSGNVAKGIRCTIKAILKGKARLVLLADDCENKDYKNLVAGLCKKHNVKLQAVEKKELLGRALGLTHFKADGSVRRQMNCGACAIIRYGSVDTQELDEFRKAFDPAVEEQA
eL41 N 25 Trichomonas Vaginalis MRAKWRKKRTRRLKRKRRKVRARSK
Ribosomal protein S14 O 159 Trichomonas Vaginalis MSAPEAAPAAPADQTATTGKKDVQLGPVKRDGEIVMGVAHIYASKNDTFVHVTDLSGSETLARCTGGIAVRAQRDEATPYAAMLAAQAVAARLKELGVDGVHIKFRGEGGSSRRLPAQGAQSALRALARAGVKIGRIEDVTPLPHDSTRRKGGRRGRRL
Ribosomal protein S19, putative P 144 Trichomonas Vaginalis MSASGKFAQRNYTYRGKTLDDLRAMELKDFVELLPTKRRRFISRSFDLKHVHLIEKLKKARQAVEGQAGVRPPVVKTHLRHMVILPEFVDNVIGIYDGHVFFEVQIKPEMIGHVLADFAPSKKVVKHSKAGVGATRSSSATSLK
40S ribosomal protein S16, putative Q 140 Trichomonas Vaginalis MKSVQVFGRKKTATAVAYCCEGSGLIKLNGTPINMVSSETLRAKILEPLQLIGEESWGNLDIRVRVHGGGHVAQVYAIRQAVAKAIVAYYQKYVDEATKTEIKNTLLGYDRTLLVADPRRMEPKKFGGQGARVRRQMSYR
40S ribosomal protein S17-B, putative R 129 Trichomonas Vaginalis MGRIRTKTTKRAARLVIERFYGQLSFDFQDNKRVCDAVADIPSKRMRNKIAGYVTHLMRRLERGPVRGISFKLQEQEREKRDNWMPTTSKLNVPKILVDPETKEMLAAIGLGEMEGVEVFTRRAGARQQ
40S ribosomal protein S26 A 118 Trichomonas Vaginalis MPVKRRNHGRSKMNRGHTRTVNCMNCGRQVPKDKAITRFAIKNMVDASSAKDVSDACIYQGYELPKTYQKQYYCVSCAVHRHVVRPRNVNVRRNRVPLFLKLRLEKLEQRNAQRLSKE
Ribosomal protein S13p/S18e, putative S 155 Trichomonas Vaginalis MPIEVTDPAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEELIVSIIQNPTEHQIPVWMLNRRFDRATGQNTHWVATDLGANIRAEIERMKKMRMKRGIRHGLGLKVRGQCTKSTGRRGGALGVERKKD
Ribosomal protein S19e, putative T 148 Trichomonas Vaginalis MIGGKTGHKGFQAREISADVFVNALAKHFQENRIVKPPEWADLVKTAALKQMAPSNQNWFYTRAAAVIRQIYMHHDASLSGLSFHYGANLKAVTMPKHHHNASRKVIRSILQQLEKSDLVKVGEKGRQLTPKGQRLLDQVATSCGKKQ
Ribosomal protein S10p/S20e, putative U 123 Trichomonas Vaginalis MADHVVPTGDEKKEIIEDLPVQKIRLTITSSKLPNLQRVVGNLMGKLKKGNLEVRGPIPMPRRRLRITTRRAPCGNGTETYDHFELRIYKRVIDFQGTAEAVKQVTQIALEPDVHVEVSVITE
40S ribosomal protein S21 V 89 Trichomonas Vaginalis MQNDAGEIVDMLIPRKCMATDRLIPPHDHASVQIQIAKVNDDGLPTGEFETVVFSGYVRALGESDYALNRIATEKGLLTGVYRNEAHKQ
Ribosomal protein S15a W 130 Trichomonas Vaginalis MVRTSVLADALKAITNAERRGMRQVLIRPSSKVIIAFLKVMASRNYIGDFEVIDDHRSGKIVINLLGRLNKCVAICPRFDVGLGDLEMWQAKLLPSRQFGYVVLSTDKGIMDHEEARKHNAGGKILGMFF
40S ribosomal protein S23, putative X 144 Trichomonas Vaginalis MGKSKACGRLAARKLRLAHKSNLWASNAYRRSLGTSIYKTPLEGTSMASGIVVGKVAVEAKQPNSAIRKAVRVQLKKNSKVVTAFVPRDGSLRLIDDNDRVLIAGMGRSGRSVGDLPGCRFKVIKVAGFSLLALWLGKKEKPRS
Ribosomal protein S24e, putative Y 140 Trichomonas Vaginalis MSKVSVHIRKYIVNKLLDRKQFVIDMQHLGAKAPTRDEIKDEVASRLKANKDLVVIFGLETKFGGGHTTGFGFVYDSLDALKKTEPKHRLIKAGLAEKGKVTRRMRKNARRQKVKVWGSGKRAEAHKIRRQQRKEELGSH
Uncharacterized protein Z 115 Trichomonas Vaginalis MSAKGGARKKWTKATNKEKREWAVIITPEQAADMVKSVPKNKVISAGKLAERYKISLTCARKALEALTAEGKIVPVINGHDLKCYGPHPDHVVEKVEEVKEETKKPAGKKGGKKQ
Ribosomal protein S3Ae, putative B 247 Trichomonas Vaginalis MGASKQQRPKTSKKIKQDSFIKKEWRHVMVPAYFTGKHDIGVTVSNKCARGRVPMDYVNNRVWELSHADMVNDLSHAYRLFSWRSIAAGSEVYTQFAGMRLTHDKLDSIMRKYRTLINASVDAKTADGFILRLFTVGFTKKLANSHKNHTYANSHKARQVRDVMVKCLTDACESNGVEQLCKDFVDEKIENEIVEKCKQICQIEGVYITKVKVIKAPALSNEQVKVLKISKDAAQLSLAPTERPAEE
Uncharacterized protein C 272 Trichomonas Vaginalis MSTQQAAPVEAQAQAPQEQQQLRGEMRGRREGRGPRGPRAPRGQQKGGWQPRTKLGRLVKSGKIKSIEEIFYHAIPIKEAEIVEHLLGEDLKDEIMKIMPVQKQTRAGQRTRFKAIAAVGDGKGHIGLGIKTAAEVANAIKGATIYAKLSILPVRRGYWGNKIGLPHTVPNTVTGKCGSIRMRLIPAPRGSGIVAGTAAKKLLTMAGFEDLFTSSLGHTKTTFNFLVATYKAMEETFKFLTPDQWEDRAFEEHPFVKNSDWLHGKKKVDAEE
Ribosomal protein S3, putative D 216 Trichomonas Vaginalis MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFVDNHGRRLQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQATIGIRVLIMLAQDPSGISGPKESQPDVIKVHEAKD
40S ribosomal protein S4 E 255 Trichomonas Vaginalis MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIGLGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEHPLISLPAREGVRPSILEGINQE
40S ribosomal protein S6 G 216 Trichomonas Vaginalis MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQGFPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKEIDGLTTTVVPRRFGPKRASTLRAMFGITDSKFDASKLVLKREVKPGKFTSPKVQRLITARRVARKNRMLKERKEKREATKKKAEQYQALLKQQQKQ
40s ribosomal protein S5-B, putative F 193 Trichomonas Vaginalis MEGVKLFGKYDYSDVDFSQLDPALVDYISVHEKQHVMVPHTAGRYVHKRFQKVSCPLVERLCNHLMSRGRNTGKKLLAIRIVEHAFDIIALSTGQNPIVTFVKGVQYCGAREDSTRIGVGGTVRRQACDVSPLRRIDQALSLITEGVRKAAFRSSRNIAECLADELIAASNNDQTSYACRKKDELERIAKSNR
40S ribosomal protein S7, putative H 168 Trichomonas Vaginalis MSETVTAAFNEIAAGKPELKDLKIESVKEVKSEGATVLVITVPYKQIKAFQSAQATFLPDLEKKLNAQICIIGKHRAFPKTPEHGRRFKAIRNYGRTLRSVNDAILDDLVFPTAIVGKRVHYDVNGKQVTRVILDKHDATRVEERLSGFAAAYNRLTGIVSVFEVAQN
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-07-08
Deposition Author(s): Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.