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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5XXB

Large subunit of toxoplasma gondii ribosome

PDB DOI: 10.2210/pdb5xxb/pdb

Classification: RIBOSOME
Organism(s): Toxoplasma Gondii

Deposited: 2017-07-03
Deposition Author(s): Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.17 Å

Literature

Large subunit of toxoplasma gondii ribosome

Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.

Primary Citation of Related Structures: 5XXB


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
25S RNA 1 3477 NA AUCAGACCUGAAAUCAGGCGAGGUUACCCGCUGAACUUAAGCAUAUUAUUAAGCGGAGGAGAAGAAAAUAACUAUGAUUCCCUUAGUAACGGCGAGUGAACCGGGAUCAGCUCAAAGUGGAAAUCAACUGCUCUUUCCGAGCUGUUGACUUGUAGCCUCGAGAGGCGUUACCAGUGGAAGCGCAGGGUUAAGUUUCUUGGGAAAGAACAUCAUAGAGGGUGAGAAUCCCGUCCUUCCCCUGCGUUUUUUGUUCCACGUACGGUACGCUUUUAUAGAGUCGCGUUCAUCGGGAUUUGAGCGCAAAAUGUGUGGUAGGUUUCACAUAAAGCUAAGUACUGGCGCGAGACCGAUAGCAAACAAGUACCGUGAGGGAAAGAUGAAAAGUUCUUUGGAAAGAGAGUUAAAAGUGCCUGAAAUUGCUGAAAAGGAAGCGAUUGGGACCUUUUUGAUUCCAAGAAGUGCCGCCGGUUUGCCAUCUAUCCCUUUGCCUUCUCUCUCUCACCAGGUUUAGGCUUUGGUUUCUUGAUGUAUUUCCGGUUCAUCUUUUUGGAGAGGUCAGCAUCAGCUACUCGGAAUUGAUUUCGUUCAAAGAAGGUAGGUUCCUUGUGGACCGUUAUAUCUUUGUUCUUUCCUUUUCCUUGUGGCUGAGGAGUGUUCCUGUUUCCGAGCUCCACUUUCGAGUACUCGGUUUCUGUGAUGCUGGCUUAAUCGGUUCCAACCGACCCGUCUUGAAACACGGACCAAGGAGUCUAACAUAUGUGCGAGUAUGCGGGUUUUACUCCUGUAUGCGCAAUGAAAGUGAGAGUAGGGAGAUUUUGCUUUGCCAUUCUUCGCACCUACGACCGACCACGAUCUCUGAGAGAGGUUUGAGUUGGAGCAUAUCUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGAGUAGAAUGAAGUCAGGGGAAACCCUGAUGGAGGUUCGUAGCGAUACUGACGUGCAAAUCGUUCGUCAAACUUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUUCUUCCGAAGUUUCUCUCAGGAUAGCUGGAGUUUUGUUAGUUUUAUCAGGUAAAGCGAAUGAUUAGAGGCAUCGGGGGCGCGUCGCCCUCGACCUAUUCUCAAACUUUAAAUGGGUAAGAUCCAGUGGUUACUUCAUUGAACUGCUGGGAUUAAUAUGAACUCCAAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGAGGGAUGCUCCUAACGCUUGGUUAAGGUGCCAAAAUGCUCGCUCAUCAGAUACCAUAAAAGGUGUUGGUUCAUUUUGACAGCAGGACGGUGGUCAUGGAAGUCGAAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUGAACCAGCCCUGAAAAUGGAUGGCGCUGAAGCGGGCUACCGAUACCAGGCCAUUGCUACUAAUUAUCACUCGACCUUUUGUAGCAAUGAGUAGGAAGACGUGGGGAUUGUGACGAAGCGUUCGGCGUAAGCCUGCGUGGAACAGUCUCUAGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGAGAAGGGUUCCAUGUGAACAGCAAUUGGACAUGGGUUAGCCGGUCCUAAGCGACAGCUUAACUGCGUAUACGUUAGGUUUCUUUACCUCGUUUCGCGAAAGGGAAUCGGGUUAAUAUUCCCGAGCCAGGACGUGGAUACUGUACGGUAACGUAAGUGAACUCCUCGACGCAGGCAGGUGCUCCGGGAAGCGUUGUCUUUGCUUUUUAACAGCCUUUUCUUUUAUACCCUGGAAUCAGUUUAGCUGGAGAUAGGGUUAGCUGGCUGGUAGAGCACCUUGGUUUCCAAGGUGUCCGGUGCGCUCCUGACUGCCCUUGAAAAGAGGAGGGAAAGUUGUUAUUUACACCCCUGGCCGUACCAAUAACCGCAUCAGGUCUCCAAGGUUAGUAGCCUCUGGUCGAUAGAAUAAGGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAACUUCGGGAAAAGGAUUGGCUCUGAGGGCUGGGUACAUUGCGCCCCAGUGGCCUGUAUUUGACGGAGCUUGGGACUGCUUCAUGCUUCGCGGCGUGUUGCGGACCCGAGCACUGUCUGUAUUGCGCUCUGGGGAAAAGGUCCAUCUCCCUUUCCGGGGUCUUGGGCUGUGCGUGUACGGUGAACAGCUAACUCAGAACUGGAGCGGACAAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGCCAUAACUGGUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAUGUGAUGAAAUUCAAUCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCCGACUUUGUGAAAUGACUUAGGAGGUGUAGCAUAAGUGGGAGCUUCGGCGCUCGUGAAAUACCACUACUCUUAAUGUCGUUUUACUUAUUCCGUUAAGUUGAGACUCAUGCUCUGCAUGUGUUUUGGUUUUAAGGUGGCUUUUGCCGCUGAUCUACGCGGAAGACACAGUCAGGUUGGGAGUUUGGCUGGGGCGGCACAUCUGUGAAACAAUAGCGCAGGUGUCCUAAGGCAAGCUCAAUGAGAACAGAAAUCUCAUGUUGACCAAAAGGGGAAAAGCUUGCUUGAUUUUGAUUUUCAGUACGAAUACAAACUGUGAAAGCAUGGCCUAUCGAUCCUUUAGGUCUGAGAAACUUUCAGCUAGAGGUGUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGAGACGCAGAAGUCUCAAAGUGUCGGAUUGUUCACCCGCCAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGACUUGAUACUGCGACAGUAAUCCAACUUAGUACGAGAGGAACAGUUGGGUCGGAUACUUGGUAAAUGCGGCUAGCUGAAAAGCUAGUGCCGCGACGCUACCAUCCGUUGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCAUGCUGGAUAUGCAGUGUUAUUCACCGCCUCCUUUGUUUCAUGCAAUGAUACAGGCCUCUGGCCUGCUUCUCAUCAAAGCCCUCCGCUUCAUGCUUUUGGGCGAGAAUCUCAAUUUCUAACAUUGGAGGUGAUACAUCCAUUGCAGACGACUUUGUUGCAACCGGGUAUUGUAAGUAUGAGAGUAGGCUUGUCUACGAUCUACUAAGAUUUUUCCUGCGUUGUUCGAUGUGG
5S RNA 3 124 NA GCUGUCGGUCAUACUGCGUCGAAUACACCGGAUCCCUUCAGACCUCCGAAGUUAAGCGGCGCAAGGCCCGGUUAGUACUUGGGUGGGGGACUCCCAGGGAAUACCCUCGGGUGCUGACAGCUUU
5.8S RNA 4 158 NA AAAUUUUCAGCAAUGGAUGUCUUGGCUCGCGCAACGAUGAAGGACGCAGCGAACUGCGAAACGCAAUGUGAAUUGCAGAAUUCAGUGAAUCAUCAGAUUUCUGAACGCAAAUGGCACCUUGGGGAUAUUCUCCUUGGUACGUCUGUUUCAGUGUCUUU

Proteins
Molecule Chains Sequence Length Organism Sequence
Ribosomal protein uL29 G 123 Toxoplasma Gondii MVKIRAYELRGKSQKELVKQLEDLKKELAQLRVAKVTGSAASKLSKVTEVRKGIARVLTVYTQKQREEARAAFKGKKFIPNDLRAKKTRAIRRRLTASQTRKMTVRKMKRTQNVPKRKFALIA
Ribosomal protein eL36 H 101 Toxoplasma Gondii MSGIAVGLKRGYVVTKKATPARPSRRPRKLSPRMSSIREIIRQVAGFAPYERRIIELLKIGTAATTKRALKFAKKRLGTHRRGKGKREELQNVVSAQRRKA
Ribosomal protein eL37 I 98 Toxoplasma Gondii MGKAGKGTGSFGKRHGKTHFLCIRCGRRAYHTQKKTCGACGYPNAKKRTYNWSEKAKRRHTTGTGRCRHLKDMPRRAKNNFREGTKATPVKKRKTQQK
Ribosomal protein eL38 J 84 Toxoplasma Gondii MAKEIRDLRKFLLTARRPDAKRVTIVRQHKKPRATGGGASTVTKFKIRCSRYLYTFVVEDREKAQKLEGSLPPSLEKVSIPGKK
Ribosomal protein eL39 K 51 Toxoplasma Gondii MGSIKGLSLKKHLGRKQKQNRPIPPWIRMRTGSKIRYNAKRRHWRRTKLGM
Ribosomal protein eL40 L 129 Toxoplasma Gondii MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLALLAQKYNCEKKVCRKCYARLPPRATNCRKKKCGHSNQLRPKKKPKN
Ribosomal protein eL15 M 205 Toxoplasma Gondii MGAYKYLEELWKKKQSDVLRFLLRVRTWEYRQLPAVHRCTQSTRPDKARRLGYKKKQGFVIYRVRVRRGDRKKQVHKGIVYGKPKNQGVRKQKSTRNLRAVAEEKVGRKICGGLRVLNSYWVGQDAVYKYYEVILVDPAHNAIRNDPRINWLCKPVMKHRECRGLTSAGKKYRGLRTKGSGAARLRPSRRACWKKRQAVRLRRYR
Ribosomal protein eL42 N 105 Toxoplasma Gondii MVNVPKLRNTFCKGPKCRKHQPHKVSQYKKGKDSLVVQGKRRYDRKQKGFGGQTKPIFRKKAKTTKKIVLKLECTKCKTKRLLPIKRCKSFELGAEKKSKGGPGY
Ribosomal protein eL43 O 96 Toxoplasma Gondii MAKRTKKVGVVGKYGTRYGASLRKQVKKIELQQHAKYSCPFCGKMATKRQAVGIWKCRGCSKVMTGGAWTLQTAAAATVRSTVARLRKQAGEAQAA
Ribosomal protein eL28 P 129 Toxoplasma Gondii MVSSELLWQCVRRNHCFIRKFNGITLSAERMNLTNKNTLKYSGIAHKQPLGLNRHGANNGCIALVTVQKCSRAMRKPTRAVQVRKFKKSKKEMSKVMKAVAERRPDLLKVANKKMKKLIRTGNSSNKKE
Ribosomal protein eL19 Q 187 Toxoplasma Gondii MSLQLQKRLAASILKCGRRRVWMDPNEASDISMANSRFSIRKLVKDNLIIRKAVAVHSRYRVRLYHEAKRAGRHMGKGKRKGTREARLPAKVLWMRRQRVLRRLLKKYRDSKKIDKHMYHSMYMRCKGNQFKNKRVLIEAIHNEKNLKLKEKALQEQLEARKSKAAAQKEKRRMKELKKEADSPASA
Ribosomal protein eL20 R 183 Toxoplasma Gondii MKADPTLQQKISQYQVVGRKQPTEAEPNPSLFRMRLFARNKVLAVSKFWYLLKKMKKVKKSTGEILAVNEIREKRPTFVKNFGVWLRYDSRTGTHNMYKEVRDISQNGAVSQLYAEMAGRHRALPSNIQIIRVAEIKASQCRRAHMQQLFDSKLKLPAIRRIFPTPKDKKSVFCARKPTLFLH
Ribosomal protein eL21 S 157 Toxoplasma Gondii MPTSFGKRARTRQKFSKGFRRHGMPAVSRLLVIHKKGDYVDIVCDPSVQKGMPYSYYHGRTGIVFNVTQRAVGVEVNKVVGNRVIKKRIHVRLEHVRKSRCNELFLRRVKENDAAHHEAHLKGESIKTKRQIPGPKPGCFVSGTMEVLEPAPFVESY
Ribosomal protein eL22 T 133 Toxoplasma Gondii MAKAHMRAAGSGRGAGGKKGAAAKPVKVKFTVDCQKPVDDNIIEAKGLERFLQTHIKVDGKCNNLGDRVQVSREKAKVFVTAELPFSKRYIKYLTKKYLKKQMLRDFMRVVSSRDTVYELRYFQMPQEDETAA
Ribosomal protein uL14 U 139 Toxoplasma Gondii MKRGRGGVGGSKMRVTLGLPVGALINCCDNSGAKNLYIIAVKGWGSCLNRLPACSLGDLVLATVKKGKPDLRKKVHMAIIVRQRRAWRRAEGYFIYFEDNAGVVANNKGEMKGSAVTGPVGKECAELWPKISAAATAIC
Ribosomal protein eL24 V 155 Toxoplasma Gondii MSAVKTTIKTDMCSFSEYRIYPGRGQRFVAKDGKVHTFIHRKEASLFRQKIKPVKLHWTLVWRRMNKKGGKDAVNKRRSRKATKTVQKAIVGLSLEDIKRTRAQKPETKAKSATAVKDAKEKSKKSKAAGVRPQSGPAQKVQIPKQQKQATRGRK
Ribosomal protein uL23 W 167 Toxoplasma Gondii MAPKAGASAGAKASAKKAVAGKVKKAQQAAKGLKASSSFKKARVRTNVHFFRPHTLRKSRQPKVVRRCYEAATCTFPKLAKTDKYTIVRQPLTTESAMKKIEETNTLVFLVDPRSNKRQIKQAVKELYDVDTQRVNTLIRPDGLKKAYVRLTSDYDALDVANKIGII
Ribosomal protein uL24 X 141 Toxoplasma Gondii MKFSSQVSSSRRKSRKAHFSAPSSVRRKIMTAPLCKELRKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGETVTIGIHPSKVVITKAKLDKDRKALLERKSRATTKGKYTEKDVAMSQVD
Ribosomal protein eL27 Y 146 Toxoplasma Gondii MVKLLKSGRVVVVLNGRHAGKKGVVVNTWEGSKERQFAFCLVAGIEKAPLKVHKKMPAKKIEKRMRVKPFLKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNEKVGKVSKDLLFLRKKLRF
Ribosomal protein uL15 Z 147 Toxoplasma Gondii MTTRLRKTRKRRGHVSAGYGRVGKHRKHPGGRGKAGGMHHMRINYDKYHPGYFGKVGMRHYHLLKNQYTCPTVNVDKLWSLVSPATLEKAEQSKDKAAVIDVTKSGYFKVLGKGDLPKIPVIVKARFFSKIAEKKIKAAGGACVLTG
Ribosomal protein uL2 A 260 Toxoplasma Gondii MGRVIRAQRKGRGSVFRAHTHKRKGEAKLRPLDFAERRGYIKGLVKDILHDPGRGAPLAEVSFRDAYRYKLNKQRMVAVEGMYTGQFIYCGKNAALTIGNILPLNKMPEGTVVSNVEEKAGDRGTLARTSGTYATIVGHSDDGSKTRIRLPSGARKTVSGYSRGMVGIVAGGGRIDKPMLKAGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVSRMAAPGQKVGLIAARRTGLLRGGRKTKLAGKSQE
Ribosomal protein uL3 B 389 Toxoplasma Gondii MSHRKFERPRHGSLGFLPRKRCKRHRGKVKAFPKDDPSKPPHLTAFMGYKAGMTHVVRELDKPGSKLHKKEIVEAVTVVDTPPMVCVGVVGYIETPRGLRALVTVWAGHLSDECKRRFYKNWYKSKRKAFTKYAKRYGDNNKMEAELTRMKNYCSVIRAICHTQPSKTPIGSKKAHVMEIQVNGGSIAEKVDFCTKMFETAVPVKAVFTEGEMIDVIGVTKGHGVKGVVSRWGVTRLPRKTHRGLRKIACIGAWHPARVQFQVPRHGQKGYFHRTEMNKKVYRVGNGADPRNATTESDLTEKRITPMGGFPHYGTVNNDFLLLKGCIVGCKKRPITFRKTLVPRTTRRALEPVNLKFIDTSAKWGHGRFQTSEEKAKFYGPLKSRAAAM
Ribosomal protein uL4 C 416 Toxoplasma Gondii MATARPLVSVYKPEDGTASGTSLMPSVFLSPLRPDLVRFVHTNMAKNRRQPYGVAPNAGYQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGGMFAPNKTWRRWHRKVNVTQKRHAVASAVAATGLPALVMARGHRIDEVPELPLVVSEKLEKVSKTREAVKILETLGCTAELERVRASAKKLRAGKGKMRGRRTHMRRGPLVVYAEDNGVTRAFRNIPGVELCKVDSLNLLQLAPGGALGRFCLYTASAFKRLQLLFGRHTGTGTAQLKKGYHLPRALMSNADLSRIVNSEEIQRVVRPARVAPQKKRGQKKNLLKNHAVLCRVNPAARNLKILARLAQTEGTKQRALVLRKKQANREEHKKHRQSARRFAAEIRQAFSDKMAAELEAAARRKAEEAGAIAQASAEEE
Ribosomal protein uL18 D 310 Toxoplasma Gondii MAFVKALKNKAYFKRYQVKYRRRRQGKTDYAARRALVLQDRNKYNAHKHRLVVRLTNKRIICQVVYSTIEGDRVLATAESTELPRYGVKIGLTNYAAAYCTGLLLARRVLKQLGMSETFEGVEATGEEYHIEENFGERRPFKVLLDVGIVRTTVGNRVFGAMKGAADGGLHVPHGIKKFPGYSKPEGEGEGSYDPEAHRARILGLHVADYMRQLKEEDPEKYSAQFSQYIKNKIEADDIEAMYKNAHAQIRKNPDAVKKERAANVQNVRQGNVIKTAKGQYVRHVKLTKAQRRERVQQKIAMIAEQMAEA
Ribosomal protein eL6 E 193 Toxoplasma Gondii MAPTAAALAKKRLRTRKPKRQLYKSPAGAAKRMAKLRSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLLVTGPFKVNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKLRKKQDEGMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLSKDKLLTQYLKTRFTLRGNMRPHEMKF
Ribosomal protein uL30 F 258 Toxoplasma Gondii MADRYSVKLLRPMEGVPVPERTKTKIARDVKLLNKMKQAKEAHAKKVHAQRHALKMRTYKYVSEYRKERENLIKLKREAKAKGGFYKEPEAKVILATRIKGINKLAPKPKMILRLFRLRQLHNAVFIKVNKATIEMLKAVQPFITYGYPTLKTIRQLIYKRGYAKVGKPGAHSRIRLQANDIVSQHLGKYGIHGVEDLVHEIYTCGPYFKQANNFLWPFKLNSPRKGFTSKRHGYNEPRKGDWGNREEMINELVQRMI
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-07-03
Deposition Author(s): Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.