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FASTA Sequence PDB Format mmCIF Format
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5XUU

Crystal structure of lachnospiraceae bacterium nd2006 cpf1 in complex with crrna and target dna (tcca pam)

PDB DOI: 10.2210/pdb5xuu/pdb

Classification: HYDROLASE/RNA/DNA
Organism(s): Neurospora Crassa (Strain Atcc 24698 / 74-Or23-1A / Cbs 708.71 / Dsm 1257 / Fgsc 987) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2017-06-26
Deposition Author(s): Ishitani, R. , Nishimasu, H. , Nureki, O. , Yamano, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

5xuu
Literature

Crystal structure of lachnospiraceae bacterium nd2006 cpf1 in complex with crrna and target dna (tcca pam)

Ishitani, R. , Nishimasu, H. , Nureki, O. , Yamano, T.

Primary Citation of Related Structures: 5XUU


Proteins
Molecule Chains Sequence Length Organism Sequence
LbCpf1 A 1231 Neurospora Crassa (Strain Atcc 24698 / 74-Or23-1A / Cbs 708.71 / Dsm 1257 / Fgsc 987) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSHMSKLEKFTNCYSLSKTLRFKAIPVGKTQENIDNKRLLVEDEKRAEDYKGVKKLLDRYYLSFINDVLHSIKLKNLNNYISLFRKKTRTEKENKELENLEINLRKEIAKAFKGNEGYKSLFKKDIIETILPEFLDDKDEIALVNSFNGFTTAFTGFFDNRENMFSEEAKSTSIAFRCINENLTRYISNMDIFEKVDAIFDKHEVQEIKEKILNSDYDVEDFFEGEFFNFVLTQEGIDVYNAIIGGFVTESGEKIKGLNEYINLYNQKTKQKLPKFKPLYKQVLSDRESLSFYGEGYTSDEEVLEVFRNTLNKNSEIFSSIKKLEKLFKNFDEYSSAGIFVKNGPAISTISKDIFGEWNVIRDKWNAEYDDIHLKKKAVVTEKYEDDRRKSFKKIGSFSLEQLQEYADADLSVVEKLKEIIIQKVDEIYKVYGSSEKLFDADFVLEKSLKKNDAVVAIMKDLLDSVKSFENYIKAFFGEGKETNRDESFYGDFVLAYDILLKVDHIYDAIRNYVTQKPYSKDKFKLYFQNPQFMGGWDKDKETDYRATILRYGSKYYLAIMDKKYAKCLQKIDKDDVNGNYEKINYKLLPGPNKMLPKVFFSKKWMAYYNPSEDIQKIYKNGTFKKGDMFNLNDCHKLIDFFKDSISRYPKWSNAYDFNFSETEKYKDIAGFYREVEEQGYKVSFESASKKEVDKLVEEGKLYMFQIYNKDFSDKSHGTPNLHTMYFKLLFDENNHGQIRLSGGAELFMRRASLKKEELVVHPANSPIANKNPDNPKKTTTLSYDVYKDKRFSEDQYELHIPIAINKCPKNIFKINTEVRVLLKHDDNPYVIGIDRGERNLLYIVVVDGKGNIVEQYSLNEIINNFNGIRIKTDYHSLLDKKEKERFEARQNWTSIENIKELKAGYISQVVHKICELVEKYDAVIALEDLNSGFKNSRVKVEKQVYQKFEKMLIDKLNYMVDKKSNPCATGGALKGYQITNKFESFKSMSTQNGFIFYIPAWLTSKIDPSTGFVNLLKTKYTSIADSKKFISSFDRIMYVPEEDLFEFALDYKNFSRTDADYIKKWKLYSYGNRIRIFRNPKKNNVFDWEEVCLTSAYKELFNKYGINYQQGDIRALLCEQSDKAFYSSFMALMSLMLQMRNSITGRTDVDFLISPVKNSDGIFYDSRNYEAQENAILPKNADANGAYNIARKVLWAIGQFKKAEDEKLDKVKIAISNKEWLEYAQTSVKH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
crRNA b 40 NA AAUUUCUACUAAGUGUAGAUGGAAAUUAGGUGCGCUUGGC
DNA (29-MER) c 29 NA GCCAAGCGCACCTAATTTCCTGGAGGACG
DNA (5'-D(*CP*GP*TP*CP*CP*TP*CP*CP*A)-3') d 9 NA CGTCCTCCA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-06-26
Deposition Author(s): Ishitani, R. , Nishimasu, H. , Nureki, O. , Yamano, T.