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5XUS

Crystal structure of lachnospiraceae bacterium nd2006 cpf1 in complex with crrna and target dna (ttta pam)

PDB DOI: 10.2210/pdb5xus/pdb

Classification: HYDROLASE/RNA/DNA
Organism(s): Lachnospiraceae Bacterium Nd2006 , Synthetic Construct

Deposited: 2017-06-26
Deposition Author(s): Ishitani, R. , Nishimasu, H. , Nureki, O. , Yamano, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

5xus
Literature

Crystal structure of lachnospiraceae bacterium nd2006 cpf1 in complex with crrna and target dna (ttta pam)

Ishitani, R. , Nishimasu, H. , Nureki, O. , Yamano, T.

Primary Citation of Related Structures: 5XUS


Proteins
Molecule Chains Sequence Length Organism Sequence
LbCpf1 A 1231 Lachnospiraceae Bacterium Nd2006 , Synthetic Construct GSHMSKLEKFTNCYSLSKTLRFKAIPVGKTQENIDNKRLLVEDEKRAEDYKGVKKLLDRYYLSFINDVLHSIKLKNLNNYISLFRKKTRTEKENKELENLEINLRKEIAKAFKGNEGYKSLFKKDIIETILPEFLDDKDEIALVNSFNGFTTAFTGFFDNRENMFSEEAKSTSIAFRCINENLTRYISNMDIFEKVDAIFDKHEVQEIKEKILNSDYDVEDFFEGEFFNFVLTQEGIDVYNAIIGGFVTESGEKIKGLNEYINLYNQKTKQKLPKFKPLYKQVLSDRESLSFYGEGYTSDEEVLEVFRNTLNKNSEIFSSIKKLEKLFKNFDEYSSAGIFVKNGPAISTISKDIFGEWNVIRDKWNAEYDDIHLKKKAVVTEKYEDDRRKSFKKIGSFSLEQLQEYADADLSVVEKLKEIIIQKVDEIYKVYGSSEKLFDADFVLEKSLKKNDAVVAIMKDLLDSVKSFENYIKAFFGEGKETNRDESFYGDFVLAYDILLKVDHIYDAIRNYVTQKPYSKDKFKLYFQNPQFMGGWDKDKETDYRATILRYGSKYYLAIMDKKYAKCLQKIDKDDVNGNYEKINYKLLPGPNKMLPKVFFSKKWMAYYNPSEDIQKIYKNGTFKKGDMFNLNDCHKLIDFFKDSISRYPKWSNAYDFNFSETEKYKDIAGFYREVEEQGYKVSFESASKKEVDKLVEEGKLYMFQIYNKDFSDKSHGTPNLHTMYFKLLFDENNHGQIRLSGGAELFMRRASLKKEELVVHPANSPIANKNPDNPKKTTTLSYDVYKDKRFSEDQYELHIPIAINKCPKNIFKINTEVRVLLKHDDNPYVIGIDRGERNLLYIVVVDGKGNIVEQYSLNEIINNFNGIRIKTDYHSLLDKKEKERFEARQNWTSIENIKELKAGYISQVVHKICELVEKYDAVIALEDLNSGFKNSRVKVEKQVYQKFEKMLIDKLNYMVDKKSNPCATGGALKGYQITNKFESFKSMSTQNGFIFYIPAWLTSKIDPSTGFVNLLKTKYTSIADSKKFISSFDRIMYVPEEDLFEFALDYKNFSRTDADYIKKWKLYSYGNRIRIFRNPKKNNVFDWEEVCLTSAYKELFNKYGINYQQGDIRALLCEQSDKAFYSSFMALMSLMLQMRNSITGRTDVDFLISPVKNSDGIFYDSRNYEAQENAILPKNADANGAYNIARKVLWAIGQFKKAEDEKLDKVKIAISNKEWLEYAQTSVKH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
crRNA b 40 NA AAUUUCUACUAAGUGUAGAUGGAAAUUAGGUGCGCUUGGC
DNA (29-MER) c 29 NA GCCAAGCGCACCTAATTTCCTAAAGGACG
DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*A)-3') d 9 NA CGTCCTTTA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-06-26
Deposition Author(s): Ishitani, R. , Nishimasu, H. , Nureki, O. , Yamano, T.