5XQ2
Crystal structure of t. thermophilus argonaute protein complexed with a bulge 5a6 on the guide strand
PDB DOI: 10.2210/pdb5xq2/pdb
Classification: DNA BINDING PROTEIN Organism(s): Thermus Thermophilus (Strain Hb27 / Atcc Baa-163 / Dsm 7039) , Synthetic Construct
Deposited: 2017-06-06 Deposition Author(s): Gogakos, T. , Juranek, S. , Patel, D. , Serganov, A. , Sheng, G. , Tuschl, T. , Wang, J. , Wang, Y. , Zhao, H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.33 Å
Crystal structure of t. thermophilus argonaute protein complexed with a bulge 5a6 on the guide strand
Gogakos, T. , Juranek, S. , Patel, D. , Serganov, A. , Sheng, G. , Tuschl, T. , Wang, J. , Wang, Y. , Zhao, H.
Primary Citation of Related Structures: 5XQ2
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| TtAgo (D546N) | A | 685 | Thermus Thermophilus (Strain Hb27 / Atcc Baa-163 / Dsm 7039) , Synthetic Construct | MNHLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGLSLLDYHASKGRLQGREGGRVAWVADPKDPRKPIPHLTGLLVPVLTLEDLHEEEGSLALSLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESFRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFLLLTVHRDFRGTPRPLKLVHEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIRHLKEVDREKLFFV |
| TtAgo (D546N) | B | 685 | Thermus Thermophilus (Strain Hb27 / Atcc Baa-163 / Dsm 7039) , Synthetic Construct | MNHLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGLSLLDYHASKGRLQGREGGRVAWVADPKDPRKPIPHLTGLLVPVLTLEDLHEEEGSLALSLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESFRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFLLLTVHRDFRGTPRPLKLVHEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIRHLKEVDREKLFFV |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*TP*GP*AP*AP*GP*AP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3') | x | 22 | NA | TGAGGATAGTAGGTTGTATAGT |
| DNA (5'-D(P*TP*GP*AP*AP*GP*AP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3') | e | 22 | NA | TGAGGATAGTAGGTTGTATAGT |
| DNA (5'-D(*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3') | y | 19 | NA | TATACAACCTACTACCTCG |
| DNA (5'-D(*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3') | f | 19 | NA | TATACAACCTACTACCTCG |
| DNA (5'-D(*AP*GP*T)-3') | c | 3 | NA | AGT |
| DNA (5'-D(*AP*GP*T)-3') | d | 3 | NA | AGT |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2017-06-06 Deposition Author(s): Gogakos, T. , Juranek, S. , Patel, D. , Serganov, A. , Sheng, G. , Tuschl, T. , Wang, J. , Wang, Y. , Zhao, H.