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FASTA Sequence PDB Format mmCIF Format
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5XPG

Crystal structure of t. thermophilus argonaute protein complexed with a bulge 6'u7' on the target strand

PDB DOI: 10.2210/pdb5xpg/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Thermus Thermophilus (Strain Hb27 / Atcc Baa-163 / Dsm 7039) , Synthetic Construct

Deposited: 2017-06-02
Deposition Author(s): Gogakos, T. , Juranek, S. , Patel, J.D. , Serganov, A. , Sheng, G. , Tuschl, T. , Wang, J. , Wang, Y. , Zhao, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.8 Å

Literature

Crystal structure of t. thermophilus argonaute protein complexed with a bulge 6'u7' on the target strand

Gogakos, T. , Juranek, S. , Patel, J.D. , Serganov, A. , Sheng, G. , Tuschl, T. , Wang, J. , Wang, Y. , Zhao, H.

Primary Citation of Related Structures: 5XPG


Proteins
Molecule Chains Sequence Length Organism Sequence
Uncharacterized protein A 685 Thermus Thermophilus (Strain Hb27 / Atcc Baa-163 / Dsm 7039) , Synthetic Construct MNHLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGLSLLDYHASKGRLQGREGGRVAWVADPKDPRKPIPHLTGLLVPVLTLEDLHEEEGSLALSLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESFRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFLLLTVHRDFRGTPRPLKLVHEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIRHLKEVDREKLFFV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*A P*GP*T)-3' c 21 NA TGAGGTAGTAGGTTGTATAGT
5'-R(*UP*AP*U*AP*CP*AP*AP*CP*CP*UP*AP*CP*AP*UP*AP*CP*CP*UP*CP* G)-3' g 20 NA UAUACAACCUACAUACCUCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-06-02
Deposition Author(s): Gogakos, T. , Juranek, S. , Patel, J.D. , Serganov, A. , Sheng, G. , Tuschl, T. , Wang, J. , Wang, Y. , Zhao, H.