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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5XOG

Rna polymerase ii elongation complex bound with spt5 kow5 and elf1

PDB DOI: 10.2210/pdb5xog/pdb

Classification: TRANSCRIPTION
Organism(s): Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct

Deposited: 2017-05-28
Deposition Author(s): Ehara, H. , Sekine, S. , Shirouzu, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3 Å

5xog
Literature

Rna polymerase ii elongation complex bound with spt5 kow5 and elf1

Ehara, H. , Sekine, S. , Shirouzu, M.

Primary Citation of Related Structures: 5XOG


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit A 1743 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MSQFPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREGGLNDPKLGSIDRNFKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKKVCECICMNCGKLLLDETNPTMAQAIRIRDPKKRFNAVWQLCKTKMVCEADAPVDEYSEQKVVSRGGCGNTQPVVRKDGMKLWGTWKKSGFSDRDAQPERKLLTPGEILNVFKHISPEDCFRLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKLSDILKANINVQKLEMDGSPQHIINEVEQLLQFHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAILKPKPLWTGKQLLSIAIPSGIHLQRTDGGNSLLSPKDNGMLIVDGKVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNYWLLHNGFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSRTLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNSIKPDVIEYAADILGDVELQKELNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQIFHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDREIALDIEKAKVIQSSIEYTTLKNVTSATEIYYDPDPTSTVIEEDFDTVEAYFSIPDEKVEETIDKQSPWLLRLELDRARMLDKQLTMNQVADKISEVFSDDLFVMWSEDNADKLIIRCRVIRDPKAMDEELEAEEDQMLKRIEAHMLDLIALRGIPGISKVYMVKHKVSVPDESGEYKNEELWALETDGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVMLGQLAPMGTGAFDVMIDEKLLTSLPADYAPTMPLFKGKATQGSATPYDNNAQYDDEFNHDDVADVMFSPMAETGSGDDRSGGLTEYAGIQSPYQPTSPGLSATSPGFAPTSPGFAPTSPRYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPASPQYSPSRHSPNGESKEGE
RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III J 72 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MIIPVRCFSCGKVVGDKWDAYLRLLEEGKQEGDALDELKLKRYCCRRMVLTHVDLIEKFLRYNPLEKKDFDS
RNA polymerase II subunit B12.5 K 118 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MNAPDRFELFILPDDVPKLKITPDSRVPNCIIIKFEREDHTLANLLREELALYPDVTFVAYKVEHPLFANFVMRLQTEEGTRPKQALERACASIINKLKTLDHKFNEEWNIKNFSLND
RNA polymerase subunit ABC10-alpha L 72 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MSREGFVAPSGTDLAAAASGVAPNKHYGVKYTCGACAHNFSLNKSDPVRCKECGHRVIYKARTKRMIQFDAR
Transcription elongation factor 1 homolog M 85 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct GPGMGKRKSSARKPAPKIKQKLETQFTCLFCNHDNSVVCTLDKKNSIGLLECKKCGQRFQAPINSLSQPIDIYSDWIDACEAVAE
Spt4/5 complex component W 83 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct GPGPSIPVANQRMTGRDPTLNKTVKIRQGGYKGKIGIVKEANGDRFRVELHNPNKTIPIPCSFLLIESTHGWVPYEDFVASDR
DNA-directed RNA polymerase subunit beta B 1227 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MSYDPYSIDDTITTEDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHTNEKDNINKRYEIRFGKIYLSRPTMTEADGTTHAMFPQEARLRNLTYSSPVYLDMEKSMFTSIDDEGNPNATLDWQQVHEPIKDGVEEGNKVHIGKVPIMLRSKFCSLRTLDEVDLYKMKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISTMQIKLYGREDKGTGRTIKATLPYVKQDIPIVIVFRALGVVPDGEILQHICYDENDWQMLEMLKPCIEEGFVIQDKEVALDFIGRRGSAALGIRREKRIQYAKDILQKELLPHITQEEGFETRKTFFLGYMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRILFRKLTREIYRYMQRCIETDRDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSGISIGSPSEPIINFLEEWGMEPLEDYDPAQHTKSTRIFVNGVWTGIHRDPSMLVSTMRDLRRSGAISPEVSIIRDIREREFKIFTDVGRVYRPLFIVEDDESKDNKGELRITKEHIRKIQQGYDDDAMNDDSEEQEQDVYGWSSLVTSGVIEYVDGEEEETIMIAMTPEDLQTRSLEQKEIDLNDTAKRIKPEMSTSSHHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKRFGISIVEEFEKPTRATTLRLKHGTYEKLDEDGLIAPGVRVSGDDIIIGKTTPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVGSIRGYEGDATPFTDLTVDAVSNLLRDNGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQLHIPYAAKLLFQELMAMNIAPRLYTERSGVSMRS
RNA polymerase II third largest subunit B44, part of central core C 304 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MSKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEFISHRLGLIPLVSEDVEEMKYSRDCTCEDYCDECSVVLELSARHEGEEGTTDVYSSSLIKVSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGIAKEHAKWSPCSAIAFEYDPHNKLKHTDFWFEVDAKKEWPDSKYATWEEPPKPGEVFDYKAKPNRFYMTVETTGSLKANQVFSRGIKTLQEKLANVLFELENSRPANTTAYGGATAYGGQTVYGRETSYGGNTNYGDYNAPY
RNA polymerase II subunit B32 D 186 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MNVSTSTVGARRRRAKQQVDDEENATLLRLGPEFALKQYDHDGNEHDLIALSLSESRLLIREALKARSRARNGGVDIESSNGEIDDDELAKVTSGAVANGVVKKTLDYLNTFARFKDEETCTAVDQLLHNSSDCSVLHPFEIAQLSSLGCEDVDEAITLIPSLAAKKEVNLQRILDELNRLEDPYK
RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III E 214 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MEDNNRIISRLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKICDSMGNPQRKLMSFLANPTPEALEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTGIFIYQNNITPSANKMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLSDGEKSQLLQRYKLKESQLPRIQREDPVARYLGLKRGQVVKIIRRSETSGRYASYRICL
RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III F 155 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MSEDEAFNEQTENFENFEDEHFSDDNFEDRSTQPEDYAVGVTADGRQIINGDGIQEVNGTIKAHRKRSNKELAILKEERTTTPYLTKYERARILGTRALQISMNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYLPDGSYEDWGCDELIVDN
RNA polymerase II subunit G 171 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MFFLKDLSLILTLHPSYFGPQMNQYLREKLLTDVEGTCTGQFGYIVTVLDGMNIDVGKGRIIPGSGSAEFEVKYRAVVWKPFKGEVVDAIVSNVSPIGFFADVGPLNVFVSTRLIPDNLVYNPSNSPPAYMSNDELITKGSKVRLKVVGTRTDVNEIYAIGSIKEDFLGAI
RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III H 145 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MSSALFDDIFTVQTVDNGRYNKVSRIIGISTTNSAIKLTLDINNEMFPVSQDDSLTVTLANSLSLDGEDESANFSKSWRPPKPTDKSLADDYDYVMFGTVYKFEEGDEDKIKVYVSFGGLLMCLEGGYKSLASLKQDNLYILIRR
DNA-directed RNA polymerase subunit I 115 Komagataella Pastoris , Komagataella Phaffii , Komagataella Phaffii (Strain Atcc 76273 / Cbs 7435 / Cect 11047 / Nrrl Y-11430 / Wegner 21-1) , Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Synthetic Construct MASFRFCLECNNMLYPKEDKENQRLLYSCRNCDYTELAEDPKVYRHELITNIGETAGIVDDIGQDPTLPRSDKECPECHSRDCVFFQSQQRRKDTNMTLFYVCLNCKKTFRDESE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*AP*UP*CP*GP*AP*GP*AP*GP*GP*U)-3') p 17 NA UUUUUUUAUCGAGAGGU
DNA (39-MER) t 39 NA CACTCTACCGATAAGCAGAGCTACCTCTCGATTTTTGGT
DNA (30-MER) n 30 NA AATGGTTTGGCTCTGCTTATCGGTAGAGTG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-05-28
Deposition Author(s): Ehara, H. , Sekine, S. , Shirouzu, M.