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FASTA Sequence PDB Format mmCIF Format
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5XH7

Crystal structure of the acidaminococcus sp. bv3l6 cpf1 rr variant in complex with crrna and target dna (tcca pam)

PDB DOI: 10.2210/pdb5xh7/pdb

Classification: HYDROLASE/RNA/DNA
Organism(s): Acidaminococcus Sp. (Strain Bv3L6) , Synthetic Construct

Deposited: 2017-04-19
Deposition Author(s): Ishitani, R. , Nishimasu, H. , Nureki, O. , Yamano, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

5xh7
Literature

Crystal structure of the acidaminococcus sp. bv3l6 cpf1 rr variant in complex with crrna and target dna (tcca pam)

Ishitani, R. , Nishimasu, H. , Nureki, O. , Yamano, T.

Primary Citation of Related Structures: 5XH7


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cpf1 A 1310 Acidaminococcus Sp. (Strain Bv3L6) , Synthetic Construct GSHMTQFEGFTNLYQVSKTLRFELIPQGKTLKHIQEQGFIEEDKARNDHYKELKPIIDRIYKTYADQCLQLVQLDWENLSAAIDSYRKEKTEETRNALIEEQATYRNAIHDYFIGRTDNLTDAINKRHAEIYKGLFKAELFNGKVLKQLGTVTTTEHENALLRSFDKFTTYFSGFYENRKNVFSAEDISTAIPHRIVQDNFPKFKENCHIFTRLITAVPSLREHFENVKKAIGIFVSTSIEEVFSFPFYNQLLTQTQIDLYNQLLGGISREAGTEKIKGLNEVLNLAIQKNDETAHIIASLPHRFIPLFKQILSDRNTLSFILEEFKSDEEVIQSFCKYKTLLRNENVLETAEALFNELNSIDLTHIFISHKKLETISSALCDHWDTLRNALYERRISELTGKITKSAKEKVQRSLKHEDINLQEIISAAGKELSEAFKQKTSEILSHAHAALDQPLPTTLKKQEEKEILKSQLDSLLGLYHLLDWFAVDESNEVDPEFSARLTGIKLEMEPSLSFYNKARNYATKKPYSVEKFKLNFQMPTLARGWDVNKEKNNGAILFVKNGLYYLGIMPKQKGRYKALSFEPTEKTSEGFDKMYYDYFPDAAKMIPRCSTQLKAVTAHFQTHTTPILLSNNFIEPLEITKEIYDLNNPEKEPKKFQTAYAKKTGDQKGYREALCKWIDFTRDFLSKYTKTTSIDLSSLRPSSQYKDLGEYYAELNPLLYHISFQRIAEKEIMDAVETGKLYLFQIYNKDFAKGHHGKPNLHTLYWTGLFSPENLAKTSIKLNGQAELFYRPKSRMKRMAHRLGEKMLNKKLKDQKTPIPDTLYQELYDYVNHRLSHDLSDEARALLPNVITKEVSHEIIKDRRFTSDKFFFHVPITLNYQAANSPSKFNQRVNAYLKEHPETPIIGIDRGERNLIYITVIDSTGKILEQRSLNTIQQFDYQKKLDNREKERVAARQAWSVVGTIKDLKQGYLSQVIHEIVDLMIHYQAVVVLENLNFGFKSKRTGIAEKAVYQQFEKMLIDKLNCLVLKDYPAEKVGGVLNPYQLTDQFTSFAKMGTQSGFLFYVPAPYTSKIDPLTGFVDPFVWKTIKNHESRKHFLEGFDFLHYDVKTGDFILHFKMNRNLSFQRGLPGFMPAWDIVFEKNETQFDAKGTPFIAGKRIVPVIENHRFTGRYRDLYPANELIALLEEKGIVFRDGSNILPKLLENDDSHAIDTMVALIRSVLQMRNSNAATGEDYINSPVRDLNGVCFDSRFQNPEWPMDADANGAYHIALKGQLLLNHLKESKDLKLQNGISNQDWLAYIQELRN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
crRNA b 43 NA AAUUUCUACUCUUGUAGAUGGAAAUUAGGUGCGCUUGGCAACC
Target DNA strand c 34 NA GGTTGCCAAGCGCACCTAATTTCCTGGAGGACTG
Non-target DNA strand d 10 NA CAGTCCTCCA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-04-19
Deposition Author(s): Ishitani, R. , Nishimasu, H. , Nureki, O. , Yamano, T.