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5XCV

Crystal structure of nz-1 fv-clasp fragment with its antigen peptide

PDB DOI: 10.2210/pdb5xcv/pdb

Classification: IMMUNE SYSTEM
Organism(s): Salmonella Enterica , Cucumber Leaf Spot Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2017-03-23
Deposition Author(s): Arimori, T. , Takagi, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.143 Å

Literature

Crystal structure of nz-1 fv-clasp fragment with its antigen peptide

Arimori, T. , Takagi, J.

Primary Citation of Related Structures: 5XCV


Proteins
Molecule Chains Sequence Length Organism Sequence
VH(S112C)-SARAH chimera,VH(S112C)-SARAH chimera A 172 Salmonella Enterica , Cucumber Leaf Spot Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSMKEVQLVESGGGLVQPGRSLKLSCAASGFTFSNYGMAWVRQTPTKGLEWIASISAGGDKTYYGDSVKGRFSISRDNAKTTHYLQMDSLRSEDTATYYCAKTSRVYFDYWGQGVMVTVCSGSDYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAIEAK
VH(S112C)-SARAH chimera,VH(S112C)-SARAH chimera D 172 Salmonella Enterica , Cucumber Leaf Spot Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSMKEVQLVESGGGLVQPGRSLKLSCAASGFTFSNYGMAWVRQTPTKGLEWIASISAGGDKTYYGDSVKGRFSISRDNAKTTHYLQMDSLRSEDTATYYCAKTSRVYFDYWGQGVMVTVCSGSDYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAIEAK
VL-SARAH(S37C) chimera,VL-SARAH(S37C) chimera B 165 Salmonella Enterica , Cucumber Leaf Spot Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSHMQFVLTQPNSVSTNLGSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSIDRSSNSALLTINNVQTEDEADYFCHSYSSGIVFGGGTKLTVLGGSDYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEAK
VL-SARAH(S37C) chimera,VL-SARAH(S37C) chimera E 165 Salmonella Enterica , Cucumber Leaf Spot Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSHMQFVLTQPNSVSTNLGSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSIDRSSNSALLTINNVQTEDEADYFCHSYSSGIVFGGGTKLTVLGGSDYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQCKRQPILDAIEAK
PA14 peptide C 14 Salmonella Enterica , Cucumber Leaf Spot Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EGGVAMPGAEDDVV
PA14 peptide F 14 Salmonella Enterica , Cucumber Leaf Spot Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EGGVAMPGAEDDVV
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-03-23
Deposition Author(s): Arimori, T. , Takagi, J.