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5X8T
Structure of the 50s large subunit of chloroplast ribosome from spinach
PDB DOI: 10.2210/pdb5x8t/pdb
Classification: RIBOSOME Organism(s): Spinacia Oleracea
Deposited: 2017-03-03 Deposition Author(s): Ahmed, T. , Bhushan, S. , Shi, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.3 Å
Structure of the 50s large subunit of chloroplast ribosome from spinach
Ahmed, T. , Bhushan, S. , Shi, J.
Primary Citation of Related Structures: 5X8T
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L32, chloroplastic | 1 | 56 | Spinacia Oleracea | AVPKKRTSIYKKRIRKNIWKKKGYWAALKAFSLAKSLSTGNSKSFFVRKISNQTLE |
| protein L3 | D | 221 | Spinacia Oleracea | SVDAGIGVMGTKLGMMSFFEEDGTVVPVTVIGFKEGNIVTQVKTESTDGYNAVQVGYERLRDRKLTMPERGHLNKAGVIPMRHLQEFRLVSVDDFTPSQKLLFEELFKEGDMVDISGTTIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSIGAGTTPGHVYKGKKMPGRMGGTKTKIRKLKIMKIDTDLRVVMIKGAVPGKPGNLLRLAPAKIVGKNIPKN |
| 50S ribosomal protein L4, chloroplastic | E | 243 | Spinacia Oleracea | ELIPLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE |
| 50S ribosomal protein L5, chloroplastic | F | 220 | Spinacia Oleracea | AAGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKEAYKLLSLMGMPFREGSGPSTLVRKKKLKSHHFDAKKGRRY |
| protein L6 | G | 182 | Spinacia Oleracea | KESRIGKQPITVPANVAIAMEGQDLKVKGPLGELSITYPREVLVEKQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK |
| protein L9 | H | 155 | Spinacia Oleracea | QKKVKKIRKIILKEDIPDLGKKGQLLDVRAGFLRNFLLPLGKAEVVTPLLLKEMKMEDERIEAEKKRVKEEAQQLARMFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKKVVFLPDIRETGEYIAELKLHPDVTAQVRVTVFAN |
| 50S ribosomal protein L13, chloroplastic | K | 197 | Spinacia Oleracea | STKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVEK |
| 50S ribosomal protein L14, chloroplastic | L | 121 | Spinacia Oleracea | MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPEVL |
| protein L15 | M | 192 | Spinacia Oleracea | FRLDNLGPQPGSRKKGKRKGRGHAAGQGGSCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRIPKLRGIAGGMRAGLPKYVPINLRDIEVAGFKEGEEVSLESLKAKGIINPSGRERRLPLKILGEGELSTKLQIKARAFSGSAKEKLEAAGCSVTVLPGRKKYIKESVRKNLARADEYFAKKRAASASEAESA |
| 50S ribosomal protein L16, chloroplastic | N | 135 | Spinacia Oleracea | MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAASKMPIRTQFIISG |
| protein L17 | O | 116 | Spinacia Oleracea | MKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV |
| 50S ribosomal protein L33, chloroplastic | 2 | 65 | Spinacia Oleracea | AKGKDVRVKVILECTGCVRKSVNKGSRGVSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK |
| protein L18 | P | 123 | Spinacia Oleracea | AKAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF |
| 50S ribosomal protein L19, chloroplastic | Q | 156 | Spinacia Oleracea | SEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK |
| 50S ribosomal protein L20, chloroplastic | R | 127 | Spinacia Oleracea | TRVKRGYIARRRRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGVYYNYSKFIHDLYKRQLLLNRKILAQIAILNPNCIYMIYNEIIKKEDCKKYLEII |
| 50S ribosomal protein L21, chloroplastic | S | 201 | Spinacia Oleracea | AKRRRFQEIPEELKAEFEEFQRPPNQKPQLSDVLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEAEVEAKEEAEAEAEAEAVPV |
| 50S ribosomal protein L22, chloroplastic | T | 199 | Spinacia Oleracea | MGFFKKKEKKAEFDVFRLYGLHHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMIKRPTCHITIVLRDITHFDSYDKFLESLTPKKLIALLGLMSTGRRRELLCGRFRENHKIKSFLYKIALFKRYEVM |
| 50S ribosomal protein L23, chloroplastic | U | 122 | Spinacia Oleracea | ATEAVAPTTEEAATSQPKTSKKAKKLKYPRRILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIFPGGN |
| 50S ribosomal protein L24, chloroplastic | V | 145 | Spinacia Oleracea | RIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAA |
| protein L27 | X | 137 | Spinacia Oleracea | AHKKGAGSTKNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGKDHTIFALIDGLVKFEKYGPDKKKVSVYPREIQPENPNSYRARKRENFRLQREKKKARREGYSFQPQLILASAATDNADESAVC |
| protein L28 | Y | 77 | Spinacia Oleracea | RRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE |
| 50S ribosomal protein L34, chloroplastic | 3 | 61 | Spinacia Oleracea | GKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRASP |
| protein L29 | Z | 109 | Spinacia Oleracea | KKEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA |
| 50S ribosomal protein L31 | 0 | 94 | Spinacia Oleracea | RKSDIHPEFREDAKVYCNGELVMTTGGTQKDYTVEVWSGNHPFYLGNRSALLLDADQVEKFRKKYGELTQIMEIPVLKGEIILPPKKKSKAKKK |
| 50S ribosomal protein L35, chloroplastic | 4 | 73 | Spinacia Oleracea | AKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV |
| 50S ribosomal protein L36, chloroplastic | 5 | 37 | Spinacia Oleracea | MKIRASVRPICEKCRLIRRRGRIIVICSNPKHKQRQG |
| protein cL37 | 6 | 142 | Spinacia Oleracea | MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPTLGQRLMTHGPVIAQKRGTVVAMVSAAADETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKMKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV |
| protein cL38 | 7 | 116 | Spinacia Oleracea | MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMKTRPKKTARWDIKRGPAVYPPLPPLPAEWTIVSSAVDEADSSSSTTSSSAEIAQSA |
| 50S ribosomal protein L2, chloroplastic | C | 271 | Spinacia Oleracea | AIHLYKTSTSSTRNGAVQVKSNPRNNLISGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKRLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKSPTTPWGYPALGRRSRKRNKYSDNFIIRRRSK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 4.8S rRNA | w | 106 | NA | AGAGAAGGUCACGGCGAGACGAGCCGUUUAUCAUUACGAUAGGUGUCAAGUGGAAGUGCAGUGAUGUAUGCAGCUGAGGCAUCCUAACAGACCCACAGACUUGAAC |
| 23S rRNA | a | 2810 | NA | UUCAAACGAGGAAAGGCUUACGGUGGAUACCUAGGCACCCAGAGACGAGGAAGGGCGUAUUAAUCGACGAAAUGCUUCGGGGAGUUGAAAAUAAGCAGAGAUCCGGAGAUUCCCGAAUAGGUCAACCUUUCGAACUUCUGCUGAAUCCAUGGGCAGGCAAGAGACAACCUGGCGAACUGAAACAUCUUAGUAGCCAGAGGAAAAGAAAGCAAAAGCGAUUCCCGUAGUAGCGGCGAGCGAAAUGGGAGCAGCCUAAACCGUGAAAACGGGGUUGUGGGAGAGCAAUACAAGCGUCGUGCUGCUAGGCGAAUCAGUGGAGUGCGGAACCCUAGAUGGUGAAAGUCCAGUAGCCGAAAGCAUCACUAGCUUAUGCUCUGACCCGAGUAGCAUGGGGCACGUGGAAUCCCGUGUGAAUCAGCAAGGACCACCUUGCAAGGCUAAAUACUCCUGGGUGACCGAUAGCGAAGUAGUACCGUGAGGGAAGGGUGAAAAGAACCCCCAUCGGGGAGUGAAAUAGAACAUGAAACCGUAAGCUCUCAAGCAGUGGGAGGGGGACCAGACCCUGACCGCGUGCCUGUUGAAGAAUGAGCCGGCGACUCAUAGGCAGUGGCUUGGUUAAGGGAACCCACCGGAGCCGUAGCGAAAGCGAGUCUUCAUAGGGCAAUUGUCACUGCUUAUGGACCCGAACCUGGGUGAUCUAUCCAUGACCAGGAUGAAGCUUGGGUGAAACUAAGUGGAGGUCCGAACCGACUGAUGUUGAAGAAUCAGCGGAUGAGUUGUGGUUAGGGGUGAAAUGCCACUCGAACCCAGAGCUAGCUGGUUCUCCCCGAAAUGCGUUGAGGCGCAGCAGUUGACUGGACAUCUAGGGGUAAAGCACUGUUUCGGUGCGGGCCGCGAGAGCGGUACCAAAUCGAGGCAAACUCUGAAUACUAGAUAUGACCUCCAAAUAACAGGGGUCAAGGUCGGCCAGUGAGACGAUGGGGGAUAAGCUUCAUCGUCGAGAGGGAAACAGCCCGGAUCACCAGCUAAGGCCCCUAAAUGACCGCUCAGUGAUAAAGGAGGUAGGGGUGCAGAGACAGCCAGGAGGUUUGCCUAGAAGCAGCCACCCUUGAAAGAGUGCGUAAUAGCUCACUGAUCGAGCGCUCUUGCGCCGAAGAUGAACGGGGCUAAGCGGUCUGCCGAAGCUGUGGGAUGUAAAAAAACAUCGGUAGGGGAGCGUUCCGUGUUAGGGAGAAACGCGUGCGUGAGCCGCGUUGGACGAAGCGGAAGCGAGAAUGUCGGCUUGAGUAACGCAAACAUUGGUGAGAAUCCAAUGCCCCGAAAACCUAAGGGUUCCUCCGCAAGGUUCGUCCACGGAGGGUGAGUCAGGGCCUAAGAUCAGGCCGAAAGGCGUAGUCGAUGGACAACAGGUGAAUAUUCCUGUACUACCCCUUGUUGGUCCCGAGGGACGGAGGAGGCUAGGUUAGCCGAAAGAUGGUUAUCGGUUCAAGGACGCAAGGUGACCCUGUUUUUCAGGGUAAGAAGGGGUAGAGAAAAUGCCUCGAGCCAAUGUUCGAGUACCAGGCGCUACGGCGCUGAAGUAACCGAUGCCAUACUCCCAGGAAAAGCUCGAACGACCUUCAACAAAAGGGUACCUGUACCCGAAACCGACACAGGUAGGUAGGUAGAGAAUACCUAGGGGCGCGAGACAACUCUCUCUAAGGAACUCGGCAAAAUAGCCCCGUAACUUCGGGAGAAGGGGUGCCCCCUCACAAAGGGGGUCGAAGUGACCAGGCCCGGGCGACUGUUUACCAAAAACACAGGUCUCCGCAAAGUCGUAAGACCAUGUAUGGGGGCUGACGCCUGCCCAGUGCCGGAAGGUCAAGGAAGUUGGUGACCUGAUGACAGGGGAGCCGGCGACCGAAGCCCCGGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUCUGGGCACUGUCUCGGAGAGAGGCUCGGUGAAAUAGACAUGUCUGUGAAGAUGCGGACUACCUGCACCUGGACAGAAAGACCCUAUGAAGCUUUACUGUUCCCUGGGAUUGGCUUUGGGCUUUUCCUGCGCAGCUUAGGUGGAAGGCGAAGAAGGCCCCCUUCCGGGGGGGCCCGAGCCAUCAGUGAGAUACCACUCUGGAAGAGCUAGAAUUCUAACCUUGUGUCAGGACCUACGGGCCAAGGGACAUUCUCAGGUAGACAGUUUCUAUGGGGCGUAGGCCUCCCAAAAGGUAACGGAGGCGUGCAAAGGUUUCCUCGGGCCGGACGGAGAUUGGCCCUCGAGUGCAAAGGCAGAAGGGAGCUUGACUGCAAGACCCACCCGUCGAGCAGGGACGAAAGUCGGCCUUAGUGAUCCGACGGUGCCGAGUGGAAGGGCCGUCGCUCAACGGAUAAAAGUUACUCUAGGGAUAACAGGCUGAUCUUCCCCAAGAGUUCACAUCGACGGGAAGGUUUGGCACCUCGAUGUCGGCUCUUCGCCACCUGGGGCUGUAGUAUGUUCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGUGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCAUAUCCGGUGUGGGCGUUAGAGCAUUGAGAGGACCUUUCCCUAGUACGAGAGGACCGGGAAGGACGCACCUCUGGUGUACCAGUUAUCGUGCCCACGGUAAACGCUGGGUAGCCAAGUGCGGAGCGGAUAACUGCUGAAAGCAUCUAAGUAGUAAGCCCACCCCAAGAUGAGUGCUCUCCUA |
| 5S rRNA | b | 121 | NA | UAUUCUGGUGUCCUAGGCGUAGAGGAACCACACCAAUCCAUCCCGAACUUGGUGGUUAAACUCUACUGCGGUGACGAUACUGUAGGGGAGGUCCUGCGGAAAAAUAGCUCGACGCCAGGAU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2017-03-03 Deposition Author(s): Ahmed, T. , Bhushan, S. , Shi, J.