5X8P
Structure of the 70s chloroplast ribosome from spinach
PDB DOI: 10.2210/pdb5x8p/pdb
Classification: RIBOSOME Organism(s): Spinacia Oleracea
Deposited: 2017-03-03 Deposition Author(s): Ahmed, T. , Bhushan, S. , Shi, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.4 Å
Structure of the 70s chloroplast ribosome from spinach
Ahmed, T. , Bhushan, S. , Shi, J.
Primary Citation of Related Structures: 5X8P
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L32, chloroplastic | 1 | 56 | Spinacia Oleracea | AVPKKRTSIYKKRIRKNIWKKKGYWAALKAFSLAKSLSTGNSKSFFVRKISNQTLE |
| 30S ribosomal protein S4, chloroplastic | D | 201 | Spinacia Oleracea | MSRYRGPRFKKIRRLGALPGLTNKRPRAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYGITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLSPREELPKHLTLNPFPYKGLVNQIIDSKWVGLKINELLVVEYYSRQT |
| 30S ribosomal protein S5, chloroplastic | E | 253 | Spinacia Oleracea | CIKKDDIDITFFEQDNPDEEITFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPMEELWK |
| 30S ribosomal protein S6 alpha, chloroplastic | F | 146 | Spinacia Oleracea | DFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRKY |
| 30S ribosomal protein S7, chloroplastic | G | 155 | Spinacia Oleracea | MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKLSSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR |
| 30S ribosomal protein S8, chloroplastic | H | 134 | Spinacia Oleracea | MGKDTIADIITCIRNADMNRKGTVRIVSTNITENIVKILLREGFIENARKHQERNKYFLVLTLRHRRNKKGPYLNTFHLKRVSRPGLRIYSNYQRIPRILGGMGIAILSTSRGIMTDREARLEGIGGEILCYIW |
| 30S ribosomal protein S11, chloroplastic | K | 138 | Spinacia Oleracea | MAKPIPKIGSRRNGRISSRKSARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV |
| 30S ribosomal protein S12, chloroplastic | L | 123 | Spinacia Oleracea | MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGVKKPK |
| 30S ribosomal protein S13, chloroplastic | M | 126 | Spinacia Oleracea | ARGRSSSVSFPAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVIILRKEKRFNRVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLKG |
| 30S ribosomal protein S14, chloroplastic | N | 100 | Spinacia Oleracea | MARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVTSLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGRPRANIRDFGLSGHILREMVHTCLLPGATRSSW |
| 30S ribosomal protein S15, chloroplastic | O | 90 | Spinacia Oleracea | MKKNSFISVISDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKINGVRYKELISKLNIRELKTR |
| 50S ribosomal protein L33, chloroplastic | 2 | 65 | Spinacia Oleracea | AKGKDVRVKVILECTGCVRKSVNKGSRGVSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK |
| 30S ribosomal protein S16, chloroplastic | P | 88 | Spinacia Oleracea | MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTYLNVPAILDFLEKGAQPTETVYDILKRAEVFKEFRLNQTKFN |
| protein S17 | Q | 108 | Spinacia Oleracea | MRSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPISKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV |
| 30S ribosomal protein S18, chloroplastic | R | 101 | Spinacia Oleracea | MDKSKRPFIKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITSAIKQARILSLLPFLNNEKQFERTESTTRTANFRTKNK |
| 30S ribosomal protein S19 alpha, chloroplastic | S | 92 | Spinacia Oleracea | MTRSLKKNPFVANHLLRKIEKLNKKAEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR |
| protein S20 | T | 108 | Spinacia Oleracea | ADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPSLAPTNV |
| protein S21 | U | 137 | Spinacia Oleracea | ISSKKHENAAIAKKEEYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQECKRRRYFENKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDGDNWDMPEGGAPF |
| protein cS22 | V | 198 | Spinacia Oleracea | VVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA |
| protein cS23 | W | 121 | Spinacia Oleracea | VAPETISDVAIMGNEVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIINLWQQSGGNLAS |
| protein bTHXc | X | 47 | Spinacia Oleracea | GRGDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED |
| protein plastid pY | Y | 236 | Spinacia Oleracea | SWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDDDFIEEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPKDGKTEKLESLPVQTDKQPSFAE |
| 50S ribosomal protein L34, chloroplastic | 3 | 61 | Spinacia Oleracea | GKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRASP |
| protein L29 | Z | 109 | Spinacia Oleracea | KKEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA |
| 50S ribosomal protein L31 | 0 | 94 | Spinacia Oleracea | RKSDIHPEFREDAKVYCNGELVMTTGGTQKDYTVEVWSGNHPFYLGNRSALLLDADQVEKFRKKYGELTQIMEIPVLKGEIILPPKKKSKAKKK |
| 50S ribosomal protein L2, chloroplastic | C | 271 | Spinacia Oleracea | AIHLYKTSTSSTRNGAVQVKSNPRNNLISGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKRLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKSPTTPWGYPALGRRSRKRNKYSDNFIIRRRSK |
| 30S ribosomal protein S9, chloroplastic | I | 157 | Spinacia Oleracea | TSATAPVEVAETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERKKPGLKKARKAPQFSKR |
| 50S ribosomal protein L35, chloroplastic | 4 | 73 | Spinacia Oleracea | AKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV |
| protein S10 | J | 122 | Spinacia Oleracea | SFEDGSETSKISIAADSDQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKIMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL |
| 50S ribosomal protein L36, chloroplastic | 5 | 37 | Spinacia Oleracea | MKIRASVRPICEKCRLIRRRGRIIVICSNPKHKQRQG |
| 30S ribosomal protein S1, chloroplastic | 8 | 370 | Spinacia Oleracea | AVAVSNAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPAVES |
| protein cL37 | 6 | 142 | Spinacia Oleracea | MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPTLGQRLMTHGPVIAQKRGTVVAMVSAAADETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKMKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV |
| protein cL38 | 7 | 116 | Spinacia Oleracea | MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMKTRPKKTARWDIKRGPAVYPPLPPLPAEWTIVSSAVDEADSSSSTTSSSAEIAQSA |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S rRNA | a | 1491 | NA | UCUCAUGGAGAGUUCGAUCCUGGCUCAGGAUGAACGCUGGCGGCAUGCUUAACACAUGCAAGUCGGACGGGAAGUGGUGUUUCCAGUGGCGGACGGGUGAGUAACGCGUAAGAACCUGCCCUUGGGAGGGGAACAACAGCUGGAAACGGCUGCUAAUACCCCGUAGGCUGAGAAGCAAAAGGAGGAAUCCGCCCGAGGAGGGGCUCGCGUCUGAUUAGCUAGUUGGUGAGGUAAUAGCUUACCAAGGCGAUGAUCAGUAGCUGGUCCGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUUUUCCGCAAUGGGCGAAAGCCUGACGGAGCAAUGCCGCGUGGAGGCAGAAGGCCCACGGGUCGUGAACUUCUUUUCCCGGAGAAGAAGCAAUGACGGUAUCCGGGGAAUAAGCAUCGGCUAACUCUGUGCCAGCAGCCGCGGUAAGACAGAGGAUGCAAGCGUUAUCCGGAAUGAUUGGGCGUAAAGCGUCUGUAGGUGGCUUUUUAAGUCCGCCGUCAAAUCCCAGGGCUCAACCCUGGACAGGCGGUGGAAACUACCAAGCUGGAGUACGGUAGGGGCAGAGGGAAUUUCCGGUGGAGCGGUGAAAUGCGUAGAGAUCGGAAAGAACACCAACGGCGAAAGCACUCUGCUGGGCCGACACUGACACUGAGAGACGAAAGCUAGGGGAGCGAAUGGGAUUAGAUACCCCAGUAGUCCUAGCCGUAAACGAUGGAUACUAGGCGCUGUGCGUAUCGACCCGUGCAGUGUUGUAGCUAACGCGUUAAGUAUCCCGCCUGGGGAGUACGUUCGCAAGAAUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAAAGCGAAGAACCUUACCAGGGCUUGACAUGCCGCGAAUCCUCUUGAAAGAGAGGGGUGCCUUCGGGAACGCGGACACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGCCGUAAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUGUUUAGUUGCCAACGUUGAGUUUGGAACCCUGAACAGACUGCCGGUGAUAAGCCGGAGGAAGGUGAGGAUGACGUCAAGUCAUCAUGCCCCUUAUGCCCUGGGCGACACACGUGCUACAAUGGCCGGGACAAAGGGUCGCGAUCCCGCGAGGGUGAGCUAACCCCAAAAACCCGUCCUCAGUUCGGAUUGCAGGCUGCAACUCGCCUGCAUGAAGCCGGAAUCGCUAGUAAUCGCCGGUCAGCCAUACGGCGGUGAAUUCGUUCCCGGGCCUUGUACACACCGCCCGUCACACUAUGGGAGCUGGCCAUGCCCGAAGUCGUUACCUUAACCGCAAGGAGGGGGAUGCCGAAGGCAGGGCUAGUGACUGGAGUGAAGUCGUAACAAGGUAGCCGUACUGGAAGGUGCGGCUGGAUCACCUCCUUU |
| 5S rRNA | b | 121 | NA | UAUUCUGGUGUCCUAGGCGUAGAGGAACCACACCAAUCCAUCCCGAACUUGGUGGUUAAACUCUACUGCGGUGACGAUACUGUAGGGGAGGUCCUGCGGAAAAAUAGCUCGACGCCAGGAU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2017-03-03 Deposition Author(s): Ahmed, T. , Bhushan, S. , Shi, J.