PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5X6D

Crystal structure of prfa-dna binary complex

PDB DOI: 10.2210/pdb5x6d/pdb

Classification: DNA BINDING PROTEN/DNA
Organism(s): Listeria Monocytogenes , Synthetic Construct

Deposited: 2017-02-21
Deposition Author(s): Feng, H. , Gao, P. , Wang, Y. , Zhu, Y.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.94 Å

5x6d
Literature

Crystal structure of prfa-dna binary complex

Feng, H. , Gao, P. , Wang, Y. , Zhu, Y.L.

Primary Citation of Related Structures: 5X6D


Proteins
Molecule Chains Sequence Length Organism Sequence
Listeriolysin positive regulatory factor A A 237 Listeria Monocytogenes , Synthetic Construct MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
Listeriolysin positive regulatory factor A B 237 Listeria Monocytogenes , Synthetic Construct MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
Listeriolysin positive regulatory factor A G 237 Listeria Monocytogenes , Synthetic Construct MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
Listeriolysin positive regulatory factor A H 237 Listeria Monocytogenes , Synthetic Construct MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
Listeriolysin positive regulatory factor A M 237 Listeria Monocytogenes , Synthetic Construct MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
Listeriolysin positive regulatory factor A N 237 Listeria Monocytogenes , Synthetic Construct MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (29-MER) c 29 NA GGTAGGCATTAACATTTGTTAACGACGAT
DNA (29-MER) k 29 NA GGTAGGCATTAACATTTGTTAACGACGAT
DNA (29-MER) p 29 NA GGTAGGCATTAACATTTGTTAACGACGAT
DNA (28-MER) d 29 NA CATCGTCGTTAACAAATGTTAATGCCTAC
DNA (28-MER) l 29 NA CATCGTCGTTAACAAATGTTAATGCCTAC
DNA (28-MER) o 29 NA CATCGTCGTTAACAAATGTTAATGCCTAC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-02-21
Deposition Author(s): Feng, H. , Gao, P. , Wang, Y. , Zhu, Y.L.