PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5WN2

Ape1 exonuclease substrate complex with phosphoglycolate

PDB DOI: 10.2210/pdb5wn2/pdb

Classification: HYDROLASE, LYASE/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2017-07-31
Deposition Author(s): Freudenthal, B.D. , Whitaker, A.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.288 Å

5wn2
Literature

Ape1 exonuclease substrate complex with phosphoglycolate

Freudenthal, B.D. , Whitaker, A.M.

Primary Citation of Related Structures: 5WN2


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-(apurinic or apyrimidinic site) lyase A 276 Homo Sapiens , Synthetic Construct ALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQQTKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQAPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGNLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL
DNA-(apurinic or apyrimidinic site) lyase B 276 Homo Sapiens , Synthetic Construct ALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQQTKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQAPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGNLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3') c 11 NA TCGACGGATCC
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*G)-3') d 9 NA GCTGATGCG
DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*AP*CP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') e 21 NA GGATCCGTCGACCGCATCAGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-07-31
Deposition Author(s): Freudenthal, B.D. , Whitaker, A.M.