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5WLG

Crystal structure of h-2db with the gap501 peptide (sql)

PDB DOI: 10.2210/pdb5wlg/pdb

Classification: IMMUNE SYSTEM
Organism(s): Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans

Deposited: 2017-07-26
Deposition Author(s): Farenc, C. , Gras, S. , Josephs, T. , Rossjohn, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.1 Å

5wlg
Literature

Crystal structure of h-2db with the gap501 peptide (sql)

Farenc, C. , Gras, S. , Josephs, T. , Rossjohn, J.

Primary Citation of Related Structures: 5WLG


Proteins
Molecule Chains Sequence Length Organism Sequence
H-2 class I histocompatibility antigen, D-B alpha chain A 278 Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPP
H-2 class I histocompatibility antigen, D-B alpha chain F 278 Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPP
Beta-2-microglobulin B 99 Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM
Beta-2-microglobulin G 99 Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM
GAP50 peptide C 9 Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans SQLLNAKYL
GAP50 peptide H 9 Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans SQLLNAKYL
T cell receptor alpha variable 8D-2,Human nkt tcr alpha chain D 182 Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans ENLQALSIQEGEDVTMNCSYKTYTTVVHWYRQDSGRGPALIILIRSNEREKRSGRLRATLDTSSQSSSLSITAAQCEDTAVYFCATVYAQGLTFGLGTRVSVFPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFN
T cell receptor alpha variable 8D-2,Human nkt tcr alpha chain I 182 Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans ENLQALSIQEGEDVTMNCSYKTYTTVVHWYRQDSGRGPALIILIRSNEREKRSGRLRATLDTSSQSSSLSITAAQCEDTAVYFCATVYAQGLTFGLGTRVSVFPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFN
T-cell receptor beta chain V region C5,Human nkt tcr beta chain E 243 Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans EAAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLILELASLSQTAVYFCASSDWGDTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD
T-cell receptor beta chain V region C5,Human nkt tcr beta chain J 243 Salmonella Enterica , Enterobacter Aerogenes , Nonlabens Ulvanivorans EAAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLILELASLSQTAVYFCASSDWGDTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-07-26
Deposition Author(s): Farenc, C. , Gras, S. , Josephs, T. , Rossjohn, J.