Crystal structure of the non-neutralizing and adcc-potent c11-like antibody n12-i3 in complex with hiv-1 clade a/e gp120, the cd4 mimetic m48u1, and the antibody n5-i5.
PDB DOI: 10.2210/pdb5w4l/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct
Deposited: 2017-06-12 Deposition Author(s): Gohain, N. , Pazgier, M. , Tolbert, W.D.
Method: X-RAY DIFFRACTION Resolution: 2.92 Å
Crystal structure of the non-neutralizing and adcc-potent c11-like antibody n12-i3 in complex with hiv-1 clade a/e gp120, the cd4 mimetic m48u1, and the antibody n5-i5.
Gohain, N. , Pazgier, M. , Tolbert, W.D.
Primary Citation of Related Structures: 5W4L
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
clade A/E 93TH057 HIV-1 gp120 core | G | 385 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | SDNLWVTVYYGVPVWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIEPLGIAPTKAKRRVVQREKR |
clade A/E 93TH057 HIV-1 gp120 core | A | 385 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | SDNLWVTVYYGVPVWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIEPLGIAPTKAKRRVVQREKR |
CD4 mimetic peptide M48U1 | N | 28 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | XNLHFCQLRCKSLGLLGRCAPTXCACVX |
CD4 mimetic peptide M48U1 | M | 28 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | XNLHFCQLRCKSLGLLGRCAPTXCACVX |
Antibody N5-i5 Fab heavy chain | H | 226 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | EVQLVESGGGLVQPGGSLRLSCAASGFTFSTYAMSWVRQAPGKGLEWVSSINNSGRNTFSADSVKGRFTISRDNSKNTLFLVMNSLRAEDTAVYYCAKDLRLGGGSDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH |
Antibody N5-i5 Fab heavy chain | F | 226 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | EVQLVESGGGLVQPGGSLRLSCAASGFTFSTYAMSWVRQAPGKGLEWVSSINNSGRNTFSADSVKGRFTISRDNSKNTLFLVMNSLRAEDTAVYYCAKDLRLGGGSDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH |
Antibody N5-i5 light chain | L | 217 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | QSALTQPASVSGSPGQSITISCTGTSSDVGSYNFVSWYQQHPGKAPKLMIYEVSERPSGISNRFSGSKSGNTASLTISGLQAEDEADYYCSSYAGSTTFRVFGGGTKLTVRGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
Antibody N5-i5 light chain | I | 217 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | QSALTQPASVSGSPGQSITISCTGTSSDVGSYNFVSWYQQHPGKAPKLMIYEVSERPSGISNRFSGSKSGNTASLTISGLQAEDEADYYCSSYAGSTTFRVFGGGTKLTVRGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
Antibody N12-i3 Fab heavy chain | D | 225 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | QVQLVQSGAEVKKPGSSVRVSCKASGGSFSRYTVNWVRQAPGQGLEWMARFIPIFNMPDYAPKFQGRITITADESTSTAYLELSSLTSDDTAVYYCASRQHHEYFQEWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH |
Antibody N12-i3 Fab heavy chain | B | 225 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | QVQLVQSGAEVKKPGSSVRVSCKASGGSFSRYTVNWVRQAPGQGLEWMARFIPIFNMPDYAPKFQGRITITADESTSTAYLELSSLTSDDTAVYYCASRQHHEYFQEWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH |
Antibody N12-i3 light chain | E | 215 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | EIVLTQSPGTLSMSPGERATLSCRASRTVSSSNLAWYQQKPGQAPRLLIYDVSSRATGIPDRFSGRGSGTDFTLTISRLEPEDFAVYYCQQYGTSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Antibody N12-i3 light chain | C | 215 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | EIVLTQSPGTLSMSPGERATLSCRASRTVSSSNLAWYQQKPGQAPRLLIYDVSSRATGIPDRFSGRGSGTDFTLTISRLEPEDFAVYYCQQYGTSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Method: X-RAY DIFFRACTION
Deposited Date: 2017-06-12 Deposition Author(s): Gohain, N. , Pazgier, M. , Tolbert, W.D.