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FASTA Sequence PDB Format mmCIF Format
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5W4L

Crystal structure of the non-neutralizing and adcc-potent c11-like antibody n12-i3 in complex with hiv-1 clade a/e gp120, the cd4 mimetic m48u1, and the antibody n5-i5.

PDB DOI: 10.2210/pdb5w4l/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct

Deposited: 2017-06-12
Deposition Author(s): Gohain, N. , Pazgier, M. , Tolbert, W.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.92 Å

5w4l
Literature

Crystal structure of the non-neutralizing and adcc-potent c11-like antibody n12-i3 in complex with hiv-1 clade a/e gp120, the cd4 mimetic m48u1, and the antibody n5-i5.

Gohain, N. , Pazgier, M. , Tolbert, W.D.

Primary Citation of Related Structures: 5W4L


Proteins
Molecule Chains Sequence Length Organism Sequence
clade A/E 93TH057 HIV-1 gp120 core G 385 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct SDNLWVTVYYGVPVWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIEPLGIAPTKAKRRVVQREKR
clade A/E 93TH057 HIV-1 gp120 core A 385 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct SDNLWVTVYYGVPVWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIEPLGIAPTKAKRRVVQREKR
CD4 mimetic peptide M48U1 N 28 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct XNLHFCQLRCKSLGLLGRCAPTXCACVX
CD4 mimetic peptide M48U1 M 28 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct XNLHFCQLRCKSLGLLGRCAPTXCACVX
Antibody N5-i5 Fab heavy chain H 226 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct EVQLVESGGGLVQPGGSLRLSCAASGFTFSTYAMSWVRQAPGKGLEWVSSINNSGRNTFSADSVKGRFTISRDNSKNTLFLVMNSLRAEDTAVYYCAKDLRLGGGSDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH
Antibody N5-i5 Fab heavy chain F 226 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct EVQLVESGGGLVQPGGSLRLSCAASGFTFSTYAMSWVRQAPGKGLEWVSSINNSGRNTFSADSVKGRFTISRDNSKNTLFLVMNSLRAEDTAVYYCAKDLRLGGGSDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH
Antibody N5-i5 light chain L 217 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct QSALTQPASVSGSPGQSITISCTGTSSDVGSYNFVSWYQQHPGKAPKLMIYEVSERPSGISNRFSGSKSGNTASLTISGLQAEDEADYYCSSYAGSTTFRVFGGGTKLTVRGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Antibody N5-i5 light chain I 217 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct QSALTQPASVSGSPGQSITISCTGTSSDVGSYNFVSWYQQHPGKAPKLMIYEVSERPSGISNRFSGSKSGNTASLTISGLQAEDEADYYCSSYAGSTTFRVFGGGTKLTVRGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Antibody N12-i3 Fab heavy chain D 225 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct QVQLVQSGAEVKKPGSSVRVSCKASGGSFSRYTVNWVRQAPGQGLEWMARFIPIFNMPDYAPKFQGRITITADESTSTAYLELSSLTSDDTAVYYCASRQHHEYFQEWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH
Antibody N12-i3 Fab heavy chain B 225 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct QVQLVQSGAEVKKPGSSVRVSCKASGGSFSRYTVNWVRQAPGQGLEWMARFIPIFNMPDYAPKFQGRITITADESTSTAYLELSSLTSDDTAVYYCASRQHHEYFQEWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH
Antibody N12-i3 light chain E 215 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct EIVLTQSPGTLSMSPGERATLSCRASRTVSSSNLAWYQQKPGQAPRLLIYDVSSRATGIPDRFSGRGSGTDFTLTISRLEPEDFAVYYCQQYGTSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Antibody N12-i3 light chain C 215 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct EIVLTQSPGTLSMSPGERATLSCRASRTVSSSNLAWYQQKPGQAPRLLIYDVSSRATGIPDRFSGRGSGTDFTLTISRLEPEDFAVYYCQQYGTSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-06-12
Deposition Author(s): Gohain, N. , Pazgier, M. , Tolbert, W.D.