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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5VOC

Crystal structure of hcmv pentamer in complex with neutralizing antibody 8i21 - low resolution dataset for initial phasing by sad

PDB DOI: 10.2210/pdb5voc/pdb

Classification: Viral Protein/Immune System
Organism(s): Homo Sapiens , Human Cytomegalovirus , Human Cytomegalovirus (Strain 5508) , Human Cytomegalovirus (Strain Ad169) , Human Cytomegalovirus (Strain Merlin)

Deposited: 2017-05-02
Deposition Author(s): Chandramouli, S. , Malito, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.99 Å

5voc
Literature

Crystal structure of hcmv pentamer in complex with neutralizing antibody 8i21 - low resolution dataset for initial phasing by sad

Chandramouli, S. , Malito, E.

Primary Citation of Related Structures: 5VOC


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein H A 725 Homo Sapiens , Human Cytomegalovirus , Human Cytomegalovirus (Strain 5508) , Human Cytomegalovirus (Strain Ad169) , Human Cytomegalovirus (Strain Merlin) MRPGLPSYLIILAVCLFSHLLSSRYGAEAVSEPLDKAFHLLLNTYGRPIRFLRENTTQCTYNSSLRNSTVVRENAISFNFFQSYNQYYVFHMPRCLFAGPLAEQFLNQVDLTETLERYQQRLNTYALVSKDLASYRSFSQQLKAQDSLGEQPTTVPPPIDLSIPHVWMPPQTTPHGWTESHTTSGLHRPHFNQTCILFDGHDLLFSTVTPCLHQGFYLIDELRYVKITLTEDFFVVTVSIDDDTPMLLIFGHLPRVLFKAPYQRDNFILRQTEKHELLVLVKKDQLNRHSYLKDPDFLDAALDFNYLDLSALLRNSFHRYAVDVLKSGRCQMLDRRTVEMAFAYALALFAAARQEEAGAQVSVPRALDRQAALLQIQEFMITCLSQTPPRTTLLLYPTAVDLAKRALWTPNQITDITSLVRLVYILSKQNQQHLIPQWALRQIADFALKLHKTHLASFLSAFARQELYLMGSLVHSMLVHTTERREIFIVETGLCSLAELSHFTQLLAHPHHEYLSDLYTPCSSSGRRDHSLERLTRLFPDATVPATVPAALSILSTMQPSTLETFPDLFCLPLGESFSALTVSEHVSYIVTNQYLIKGISYPVSTTVVGQSLIITQTDSQTKCELTRNMHTTHSITVALNISLENCAFCQSALLEYDDTQGVINIMYMHDSDDVLFALDPYNEVVVSSPRTHYLMLLKNGTVLEVTDVVVDATDGSGSHHHHHH
Envelope glycoprotein L B 278 Homo Sapiens , Human Cytomegalovirus , Human Cytomegalovirus (Strain 5508) , Human Cytomegalovirus (Strain Ad169) , Human Cytomegalovirus (Strain Merlin) MCRRPDCGFSFSPGPVILLWCCLLLPIVSSAAVSVAPTAAEKVPAECPELTRRCLLGEVFEGDKYESWLRPLVNVTGRDGPLSQLIRYRPVTPEAANSVLLDEAFLDTLALLYNNPDQLRALLTLLSSDTAPRWMTVMRGYSECGDGSPAVYTCVDDLCRGYDLTRLSYGRSIFTEHVLGFELVPPSLFNVVVAIRNEATRTNRAVRLPVSTAAAPEGITLFYGLYNAVKEFCLRHQLDPPLLRHLDKYYAGLPPELKQTRVNLPAHSRYGPQAVDAR
Envelope glycoprotein UL128 C 171 Homo Sapiens , Human Cytomegalovirus , Human Cytomegalovirus (Strain 5508) , Human Cytomegalovirus (Strain Ad169) , Human Cytomegalovirus (Strain Merlin) MSPKDLTPFLTTLWLLLGHSRVPRVRAEECCEFINVNHPPERCYDFKMCNRFTVALRCPDGEVCYSPEKTAEIRGIVTTMTHSLTRQVVHNKLTSCNYNPLYLEADGRIRCGKVNDKAQYLLGAAGSVPYRWINLEYDKITRIVGLDQYLESVKKHKRLDVCRAKMGYMLQ
Envelope glycoprotein UL130 D 252 Homo Sapiens , Human Cytomegalovirus , Human Cytomegalovirus (Strain 5508) , Human Cytomegalovirus (Strain Ad169) , Human Cytomegalovirus (Strain Merlin) MLRLLLRHHFHCLLLCAVWATPCLASPWSTLTANQNPSPPWSKLTYSKPHDAATFYCPFLYPSPPRSPLQFSGFQRVSTGPECRNETLYLLYNREGQTLVERSSTWVKKVIWYLSGRNQTILQRMPRTASKPSDGNVQISVEDAKIFGAHMVPKQTKLLRFVVNDGTRYQMCVMKLESWAHVFRDYSVSFQVRLTFTEANNQTYTFCTHPNLIVGSENLYFQAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK
Envelope glycoprotein UL131A E 129 Homo Sapiens , Human Cytomegalovirus , Human Cytomegalovirus (Strain 5508) , Human Cytomegalovirus (Strain Ad169) , Human Cytomegalovirus (Strain Merlin) MRLCRVWLSVCLCAVVLGQCQRETAEKNDYYRVPHYWDACSRALPDQTRYKYVEQLVDLTLNYHYDASHGLDNFDVLKRINVTEVSLLISDFRRQNRRGGTNKRTTFNAAGSLAPHARSLEFSVRLFAN
Fab 8I21 heavy chain H 289 Homo Sapiens , Human Cytomegalovirus , Human Cytomegalovirus (Strain 5508) , Human Cytomegalovirus (Strain Ad169) , Human Cytomegalovirus (Strain Merlin) MEFGLSWVFLVAILEGVHCLVELVESGGGVVQPGRSLRLSCAASGFTFSSDGMHWVRQSPGRGLEWVAFISSDGSTPYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAMYFCAKDWALFRWLRTFDHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKSSGLEVLFQGPLGSAWSHPQFEKGGGSGGGSGGGSWSHPQFEK
Fab 8I21 light chain L 235 Homo Sapiens , Human Cytomegalovirus , Human Cytomegalovirus (Strain 5508) , Human Cytomegalovirus (Strain Ad169) , Human Cytomegalovirus (Strain Merlin) METPAELLFLLLLWLPDTTGETVMTQSPATLSVSPGGRATLSCRASQSVGINLAWYQQKPGQAPRLLIYGASTRASGFPARFSGSGSGTEFTLTITSLQSEDFAVYYCQQYNDWPPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-05-02
Deposition Author(s): Chandramouli, S. , Malito, E.