PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5VMX

Kaiso (zbtb33) zinc finger dna binding domain in complex with a hemi cpg-methylated dna resembling the specific kaiso binding sequence (kbs)

PDB DOI: 10.2210/pdb5vmx/pdb

Classification: TRANSCRIPTION/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2017-04-28
Deposition Author(s): Dyson, H.J. , Martinez-Yamout, M.A. , Nikolova, E.N. , Stanfield, R.L. , Wright, P.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å

5vmx
Literature

Kaiso (zbtb33) zinc finger dna binding domain in complex with a hemi cpg-methylated dna resembling the specific kaiso binding sequence (kbs)

Dyson, H.J. , Martinez-Yamout, M.A. , Nikolova, E.N. , Stanfield, R.L. , Wright, P.E.

Primary Citation of Related Structures: 5VMX


Proteins
Molecule Chains Sequence Length Organism Sequence
Transcriptional regulator Kaiso A 134 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MANKRMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAYLSDRS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*GP*CP*TP*TP*CP*CP*(5CM)P*GP*(5CM)P*GP*AP*AP*TP*AP*AP*CP*G)-3') d 18 NA TGCTTCCCGCGAATAACG
DNA (5'-D(*CP*GP*TP*TP*AP*TP*TP*CP*GP*CP*GP*GP*GP*AP*AP*GP*CP*A)-3') e 18 NA CGTTATTCGCGGGAAGCA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-04-28
Deposition Author(s): Dyson, H.J. , Martinez-Yamout, M.A. , Nikolova, E.N. , Stanfield, R.L. , Wright, P.E.