5VK2
Structural basis for antibody-mediated neutralization of lassa virus
PDB DOI: 10.2210/pdb5vk2/pdb
Classification: VIRAL PROTEIN/Immune system Organism(s): Homo Sapiens , Lassa Virus , Lassa Virus (Strain Mouse/Sierra Leone/Josiah/1976)
Deposited: 2017-04-20 Deposition Author(s): Branco, L.M. , Chandra, K. , Garry, R.F. , Hastie, K.M. , Kleinfelter, L.M. , Robinson, J.E. , Rowland, M.L. , Rowland, M.M. , Saphire, E.O. , Zandonatti, M.A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.201 Å
Structural basis for antibody-mediated neutralization of lassa virus
Branco, L.M. , Chandra, K. , Garry, R.F. , Hastie, K.M. , Kleinfelter, L.M. , Robinson, J.E. , Rowland, M.L. , Rowland, M.M. , Saphire, E.O. , Zandonatti, M.A.
Primary Citation of Related Structures: 5VK2
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Pre-glycoprotein polyprotein GP complex | A | 164 | Homo Sapiens , Lassa Virus , Lassa Virus (Strain Mouse/Sierra Leone/Josiah/1976) | GTFTWTLSDSEGKDTPGGYCLTRWMLIEAELKCFGNTAVAKCNEKHDEEFCDMLRLFDFNKQAIQRLKAPAQTSIQLINKAVNALINDQLIMKNHLRDIMCIPYCNYSKYWYLNHTTTGRTSLPKCWLVSNGSYLNETHFSDDIEQQADNMITEMLQKEYMERQ |
| Pre-glycoprotein polyprotein GP complex | B | 164 | Homo Sapiens , Lassa Virus , Lassa Virus (Strain Mouse/Sierra Leone/Josiah/1976) | GTFTWTLSDSEGKDTPGGYCLTRWMLIEAELKCFGNTAVAKCNEKHDEEFCDMLRLFDFNKQAIQRLKAPAQTSIQLINKAVNALINDQLIMKNHLRDIMCIPYCNYSKYWYLNHTTTGRTSLPKCWLVSNGSYLNETHFSDDIEQQADNMITEMLQKEYMERQ |
| Pre-glycoprotein polyprotein GP complex | C | 164 | Homo Sapiens , Lassa Virus , Lassa Virus (Strain Mouse/Sierra Leone/Josiah/1976) | GTFTWTLSDSEGKDTPGGYCLTRWMLIEAELKCFGNTAVAKCNEKHDEEFCDMLRLFDFNKQAIQRLKAPAQTSIQLINKAVNALINDQLIMKNHLRDIMCIPYCNYSKYWYLNHTTTGRTSLPKCWLVSNGSYLNETHFSDDIEQQADNMITEMLQKEYMERQ |
| Fab 37.7H heavy chain | D | 229 | Homo Sapiens , Lassa Virus , Lassa Virus (Strain Mouse/Sierra Leone/Josiah/1976) | DEVQLVQSGGGLVKAGGSLRLSCAASGFTFSTYSMNWIRQAPGKGLEWVASISSRSGSHINYVDSVKGRFTISRDNARDLLYLQMNSLRVDDSALYYCARDRRSGTSPLPLDVWGQGTTVTVFSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK |
| Fab 37.7H heavy chain | F | 229 | Homo Sapiens , Lassa Virus , Lassa Virus (Strain Mouse/Sierra Leone/Josiah/1976) | DEVQLVQSGGGLVKAGGSLRLSCAASGFTFSTYSMNWIRQAPGKGLEWVASISSRSGSHINYVDSVKGRFTISRDNARDLLYLQMNSLRVDDSALYYCARDRRSGTSPLPLDVWGQGTTVTVFSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK |
| Fab 37.7H heavy chain | H | 229 | Homo Sapiens , Lassa Virus , Lassa Virus (Strain Mouse/Sierra Leone/Josiah/1976) | DEVQLVQSGGGLVKAGGSLRLSCAASGFTFSTYSMNWIRQAPGKGLEWVASISSRSGSHINYVDSVKGRFTISRDNARDLLYLQMNSLRVDDSALYYCARDRRSGTSPLPLDVWGQGTTVTVFSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK |
| Fab 37.7H light chain | E | 217 | Homo Sapiens , Lassa Virus , Lassa Virus (Strain Mouse/Sierra Leone/Josiah/1976) | DQSALTQPASVSGSPGQSITISCTGTGSDIGGYNFVSWYQQYPGKAPKLIIYEVRIRASGVSNRFSGSKSGNTASLTISGLQAEDEADYYCNSYSIHSPWVFGGGTKLTVLRQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| Fab 37.7H light chain | G | 217 | Homo Sapiens , Lassa Virus , Lassa Virus (Strain Mouse/Sierra Leone/Josiah/1976) | DQSALTQPASVSGSPGQSITISCTGTGSDIGGYNFVSWYQQYPGKAPKLIIYEVRIRASGVSNRFSGSKSGNTASLTISGLQAEDEADYYCNSYSIHSPWVFGGGTKLTVLRQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| Fab 37.7H light chain | L | 217 | Homo Sapiens , Lassa Virus , Lassa Virus (Strain Mouse/Sierra Leone/Josiah/1976) | DQSALTQPASVSGSPGQSITISCTGTGSDIGGYNFVSWYQQYPGKAPKLIIYEVRIRASGVSNRFSGSKSGNTASLTISGLQAEDEADYYCNSYSIHSPWVFGGGTKLTVLRQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2017-04-20 Deposition Author(s): Branco, L.M. , Chandra, K. , Garry, R.F. , Hastie, K.M. , Kleinfelter, L.M. , Robinson, J.E. , Rowland, M.L. , Rowland, M.M. , Saphire, E.O. , Zandonatti, M.A.