PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5VIT

Crystal structure of a pseudomonas malonate decarboxylase hetero-tetramer in complex with malonate

PDB DOI: 10.2210/pdb5vit/pdb

Classification: TRANSFERASE
Organism(s): Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata

Deposited: 2017-04-17
Deposition Author(s): Maderbocus, R. , Tong, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.203 Å

5vit
Literature

Crystal structure of a pseudomonas malonate decarboxylase hetero-tetramer in complex with malonate

Maderbocus, R. , Tong, L.

Primary Citation of Related Structures: 5VIT


Proteins
Molecule Chains Sequence Length Organism Sequence
MdcA A 554 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MTTPISPPPQWSRRRQEKQRRLERVRGLADGAVLPREGLVAALEALIAPGDRVVLEGNNQKQADFLSRSLARVDPGKLHDLHMIMPSVGRPEHLDLFELGIARKLDFSFSGPQSLRIGQLLEDGLLEIGAIHTYIELYARLVVDLIPNVALVAGFVADREGNVYTGPSTEDTPALVEPTAFSDGIVIVQVNRIVDDPRDLPRVDIPASWVDFVVEADQPFYIEPLFTRDPRHIKPVHVLMAMMAIRGIYQRHNVQSLNHGIGFNTAAIELILPTYGESLGLKGKICRHWTLNPHPTLIPAIESGWVESVHCFGTELGMEGYIAQRPDVFFTGRDGSLRSNRMFCQLAGQYAVDLFIGATLQVDGDGHSSTVTRGRLAGFGGAPNMGHDPRGRRHSTPAWLDMRGEPEALLERGRKLVVQMVETFQDGGKPTFVERLDALEVARQTGMPLAPVMIYGDDVTHVLTEEGIAYLYKARSLEERQAMIAAVAGISPIGLRHDPRETQRMRREGLIALPEDLGIRRTDASRELLAAKSIAELVEWSGGLYQPPARFRSW
MdcA P 554 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MTTPISPPPQWSRRRQEKQRRLERVRGLADGAVLPREGLVAALEALIAPGDRVVLEGNNQKQADFLSRSLARVDPGKLHDLHMIMPSVGRPEHLDLFELGIARKLDFSFSGPQSLRIGQLLEDGLLEIGAIHTYIELYARLVVDLIPNVALVAGFVADREGNVYTGPSTEDTPALVEPTAFSDGIVIVQVNRIVDDPRDLPRVDIPASWVDFVVEADQPFYIEPLFTRDPRHIKPVHVLMAMMAIRGIYQRHNVQSLNHGIGFNTAAIELILPTYGESLGLKGKICRHWTLNPHPTLIPAIESGWVESVHCFGTELGMEGYIAQRPDVFFTGRDGSLRSNRMFCQLAGQYAVDLFIGATLQVDGDGHSSTVTRGRLAGFGGAPNMGHDPRGRRHSTPAWLDMRGEPEALLERGRKLVVQMVETFQDGGKPTFVERLDALEVARQTGMPLAPVMIYGDDVTHVLTEEGIAYLYKARSLEERQAMIAAVAGISPIGLRHDPRETQRMRREGLIALPEDLGIRRTDASRELLAAKSIAELVEWSGGLYQPPARFRSW
MdcA I 554 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MTTPISPPPQWSRRRQEKQRRLERVRGLADGAVLPREGLVAALEALIAPGDRVVLEGNNQKQADFLSRSLARVDPGKLHDLHMIMPSVGRPEHLDLFELGIARKLDFSFSGPQSLRIGQLLEDGLLEIGAIHTYIELYARLVVDLIPNVALVAGFVADREGNVYTGPSTEDTPALVEPTAFSDGIVIVQVNRIVDDPRDLPRVDIPASWVDFVVEADQPFYIEPLFTRDPRHIKPVHVLMAMMAIRGIYQRHNVQSLNHGIGFNTAAIELILPTYGESLGLKGKICRHWTLNPHPTLIPAIESGWVESVHCFGTELGMEGYIAQRPDVFFTGRDGSLRSNRMFCQLAGQYAVDLFIGATLQVDGDGHSSTVTRGRLAGFGGAPNMGHDPRGRRHSTPAWLDMRGEPEALLERGRKLVVQMVETFQDGGKPTFVERLDALEVARQTGMPLAPVMIYGDDVTHVLTEEGIAYLYKARSLEERQAMIAAVAGISPIGLRHDPRETQRMRREGLIALPEDLGIRRTDASRELLAAKSIAELVEWSGGLYQPPARFRSW
MdcA V 554 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MTTPISPPPQWSRRRQEKQRRLERVRGLADGAVLPREGLVAALEALIAPGDRVVLEGNNQKQADFLSRSLARVDPGKLHDLHMIMPSVGRPEHLDLFELGIARKLDFSFSGPQSLRIGQLLEDGLLEIGAIHTYIELYARLVVDLIPNVALVAGFVADREGNVYTGPSTEDTPALVEPTAFSDGIVIVQVNRIVDDPRDLPRVDIPASWVDFVVEADQPFYIEPLFTRDPRHIKPVHVLMAMMAIRGIYQRHNVQSLNHGIGFNTAAIELILPTYGESLGLKGKICRHWTLNPHPTLIPAIESGWVESVHCFGTELGMEGYIAQRPDVFFTGRDGSLRSNRMFCQLAGQYAVDLFIGATLQVDGDGHSSTVTRGRLAGFGGAPNMGHDPRGRRHSTPAWLDMRGEPEALLERGRKLVVQMVETFQDGGKPTFVERLDALEVARQTGMPLAPVMIYGDDVTHVLTEEGIAYLYKARSLEERQAMIAAVAGISPIGLRHDPRETQRMRREGLIALPEDLGIRRTDASRELLAAKSIAELVEWSGGLYQPPARFRSW
MdcC C 99 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata METLSFEFPAGQPGRGRALVGCVGSGDLEVLLEPGQPGKLSIQVQTSVNGSASRWQHLFERLFDGQTPPALLIDIHDFGATPGVVRLRLEQGFEEIGHD
MdcC R 99 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata METLSFEFPAGQPGRGRALVGCVGSGDLEVLLEPGQPGKLSIQVQTSVNGSASRWQHLFERLFDGQTPPALLIDIHDFGATPGVVRLRLEQGFEEIGHD
MdcC K 99 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata METLSFEFPAGQPGRGRALVGCVGSGDLEVLLEPGQPGKLSIQVQTSVNGSASRWQHLFERLFDGQTPPALLIDIHDFGATPGVVRLRLEQGFEEIGHD
MdcC X 99 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata METLSFEFPAGQPGRGRALVGCVGSGDLEVLLEPGQPGKLSIQVQTSVNGSASRWQHLFERLFDGQTPPALLIDIHDFGATPGVVRLRLEQGFEEIGHD
MdcD D 287 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MTDVARLLALRSFTELGARQRARALLDAGSFRELLDPFAGVQSPWLERQGIVPQADDGVVVARGLLDGQPAVLAAIEGAFQGGSLGEVSGAKIAGALELAAEDNRNGVPTRALLLLETGGVRLQEANLGLAAIAEIQAAIVDLQRYQPVVAVIAGPVGCFGGMSIAAGLCSYVLVTREARLGLNGPQVIEQEAGIAEYDSRDRPFIWSLTGGEQRFASGLADAYLADDLDEVRTSVLAYFAKGLPARPRCRRAEDYLRRLGDLDTAEQPDAAGVRRLYQGLGQGDAT
MdcD S 287 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MTDVARLLALRSFTELGARQRARALLDAGSFRELLDPFAGVQSPWLERQGIVPQADDGVVVARGLLDGQPAVLAAIEGAFQGGSLGEVSGAKIAGALELAAEDNRNGVPTRALLLLETGGVRLQEANLGLAAIAEIQAAIVDLQRYQPVVAVIAGPVGCFGGMSIAAGLCSYVLVTREARLGLNGPQVIEQEAGIAEYDSRDRPFIWSLTGGEQRFASGLADAYLADDLDEVRTSVLAYFAKGLPARPRCRRAEDYLRRLGDLDTAEQPDAAGVRRLYQGLGQGDAT
MdcD L 287 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MTDVARLLALRSFTELGARQRARALLDAGSFRELLDPFAGVQSPWLERQGIVPQADDGVVVARGLLDGQPAVLAAIEGAFQGGSLGEVSGAKIAGALELAAEDNRNGVPTRALLLLETGGVRLQEANLGLAAIAEIQAAIVDLQRYQPVVAVIAGPVGCFGGMSIAAGLCSYVLVTREARLGLNGPQVIEQEAGIAEYDSRDRPFIWSLTGGEQRFASGLADAYLADDLDEVRTSVLAYFAKGLPARPRCRRAEDYLRRLGDLDTAEQPDAAGVRRLYQGLGQGDAT
MdcD Y 287 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MTDVARLLALRSFTELGARQRARALLDAGSFRELLDPFAGVQSPWLERQGIVPQADDGVVVARGLLDGQPAVLAAIEGAFQGGSLGEVSGAKIAGALELAAEDNRNGVPTRALLLLETGGVRLQEANLGLAAIAEIQAAIVDLQRYQPVVAVIAGPVGCFGGMSIAAGLCSYVLVTREARLGLNGPQVIEQEAGIAEYDSRDRPFIWSLTGGEQRFASGLADAYLADDLDEVRTSVLAYFAKGLPARPRCRRAEDYLRRLGDLDTAEQPDAAGVRRLYQGLGQGDAT
MdcE E 284 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MGSSHHHHHHSQDPNSMSQPFASRGLAWFQALAGSLAPRPGDPASLRVADAELDGYPVRFLAVVPDPDNPFPRARQGEVGLLEGWGLAAAVDEALEADREAPRKRALLAIVDVPSQAYGRREEALGIHQALAGAVDAYARARLAGHPLIGLLVGKAMSGAFLAHGYQANRLIALHDPGVMVHAMGKAAAARITLRSVEELEALAAKVPPMAYDIDSYASLGLLWRTLPVETVEVPSTADLVRVRTCLGEALADILGGPRDLGGRLGAANREASARVRRLLREQW
MdcE T 284 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MGSSHHHHHHSQDPNSMSQPFASRGLAWFQALAGSLAPRPGDPASLRVADAELDGYPVRFLAVVPDPDNPFPRARQGEVGLLEGWGLAAAVDEALEADREAPRKRALLAIVDVPSQAYGRREEALGIHQALAGAVDAYARARLAGHPLIGLLVGKAMSGAFLAHGYQANRLIALHDPGVMVHAMGKAAAARITLRSVEELEALAAKVPPMAYDIDSYASLGLLWRTLPVETVEVPSTADLVRVRTCLGEALADILGGPRDLGGRLGAANREASARVRRLLREQW
MdcE M 284 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MGSSHHHHHHSQDPNSMSQPFASRGLAWFQALAGSLAPRPGDPASLRVADAELDGYPVRFLAVVPDPDNPFPRARQGEVGLLEGWGLAAAVDEALEADREAPRKRALLAIVDVPSQAYGRREEALGIHQALAGAVDAYARARLAGHPLIGLLVGKAMSGAFLAHGYQANRLIALHDPGVMVHAMGKAAAARITLRSVEELEALAAKVPPMAYDIDSYASLGLLWRTLPVETVEVPSTADLVRVRTCLGEALADILGGPRDLGGRLGAANREASARVRRLLREQW
MdcE Z 284 Vibrio Nigripulchritudo , Pseudomonas Stutzeri , Stylophora Pistillata MGSSHHHHHHSQDPNSMSQPFASRGLAWFQALAGSLAPRPGDPASLRVADAELDGYPVRFLAVVPDPDNPFPRARQGEVGLLEGWGLAAAVDEALEADREAPRKRALLAIVDVPSQAYGRREEALGIHQALAGAVDAYARARLAGHPLIGLLVGKAMSGAFLAHGYQANRLIALHDPGVMVHAMGKAAAARITLRSVEELEALAAKVPPMAYDIDSYASLGLLWRTLPVETVEVPSTADLVRVRTCLGEALADILGGPRDLGGRLGAANREASARVRRLLREQW
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-04-17
Deposition Author(s): Maderbocus, R. , Tong, L.