Advanced Search:
5VG6
Crystal structure of d-isomer specific 2-hydroxyacid dehydrogenase from xanthobacter autotrophicus py2 in complex with nadph and mes.
PDB DOI: 10.2210/pdb5vg6/pdb
Classification: OXIDOREDUCTASE Organism(s): Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2)
Deposited: 2017-04-10 Deposition Author(s): Almo, S.C. , Gasiorowska, O.A. , Kutner, J. , Lipowska, J. , Minor, W. , New York Structural Genomics Research Consortium (Nysgrc) , Shabalin, I.G.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.2 Å
Crystal structure of d-isomer specific 2-hydroxyacid dehydrogenase from xanthobacter autotrophicus py2 in complex with nadph and mes.
Almo, S.C. , Gasiorowska, O.A. , Kutner, J. , Lipowska, J. , Minor, W. , New York Structural Genomics Research Consortium (Nysgrc) , Shabalin, I.G.
Primary Citation of Related Structures: 5VG6
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding | A | 341 | Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2) | MHHHHHHSSGVDLGTENLYFQSMNEQASGALVFYSAVDIGQDWKSALQAAHPGLDVRIARAGDGHVEGDPEEVRYALVWKPPHGFFARFPNLKLVINLGAGVDALVARDDLPDVPVTRLSDPNMSQMMASFVLFCVLRHARDIPTFERAQREGRWHYVHPRTAAEIRVGVLGLGDLGAAAALELARHGFDVRGWSRTPKALEGVSCFHGLEALPGFLAGSEIVVVMLPLTPETRGLMNAERLAHLPRGAKFINVARGPVVDEAALIAALRSGHIAEATLDVFEVEPLPVGSPLWAMDNVLVTPHLASIAIPRTAAPQIVENIRRIEAGEPVLNQVDPRRGY |
| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding | B | 341 | Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2) | MHHHHHHSSGVDLGTENLYFQSMNEQASGALVFYSAVDIGQDWKSALQAAHPGLDVRIARAGDGHVEGDPEEVRYALVWKPPHGFFARFPNLKLVINLGAGVDALVARDDLPDVPVTRLSDPNMSQMMASFVLFCVLRHARDIPTFERAQREGRWHYVHPRTAAEIRVGVLGLGDLGAAAALELARHGFDVRGWSRTPKALEGVSCFHGLEALPGFLAGSEIVVVMLPLTPETRGLMNAERLAHLPRGAKFINVARGPVVDEAALIAALRSGHIAEATLDVFEVEPLPVGSPLWAMDNVLVTPHLASIAIPRTAAPQIVENIRRIEAGEPVLNQVDPRRGY |
| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding | C | 341 | Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2) | MHHHHHHSSGVDLGTENLYFQSMNEQASGALVFYSAVDIGQDWKSALQAAHPGLDVRIARAGDGHVEGDPEEVRYALVWKPPHGFFARFPNLKLVINLGAGVDALVARDDLPDVPVTRLSDPNMSQMMASFVLFCVLRHARDIPTFERAQREGRWHYVHPRTAAEIRVGVLGLGDLGAAAALELARHGFDVRGWSRTPKALEGVSCFHGLEALPGFLAGSEIVVVMLPLTPETRGLMNAERLAHLPRGAKFINVARGPVVDEAALIAALRSGHIAEATLDVFEVEPLPVGSPLWAMDNVLVTPHLASIAIPRTAAPQIVENIRRIEAGEPVLNQVDPRRGY |
| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding | D | 341 | Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2) | MHHHHHHSSGVDLGTENLYFQSMNEQASGALVFYSAVDIGQDWKSALQAAHPGLDVRIARAGDGHVEGDPEEVRYALVWKPPHGFFARFPNLKLVINLGAGVDALVARDDLPDVPVTRLSDPNMSQMMASFVLFCVLRHARDIPTFERAQREGRWHYVHPRTAAEIRVGVLGLGDLGAAAALELARHGFDVRGWSRTPKALEGVSCFHGLEALPGFLAGSEIVVVMLPLTPETRGLMNAERLAHLPRGAKFINVARGPVVDEAALIAALRSGHIAEATLDVFEVEPLPVGSPLWAMDNVLVTPHLASIAIPRTAAPQIVENIRRIEAGEPVLNQVDPRRGY |
| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding | E | 341 | Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2) | MHHHHHHSSGVDLGTENLYFQSMNEQASGALVFYSAVDIGQDWKSALQAAHPGLDVRIARAGDGHVEGDPEEVRYALVWKPPHGFFARFPNLKLVINLGAGVDALVARDDLPDVPVTRLSDPNMSQMMASFVLFCVLRHARDIPTFERAQREGRWHYVHPRTAAEIRVGVLGLGDLGAAAALELARHGFDVRGWSRTPKALEGVSCFHGLEALPGFLAGSEIVVVMLPLTPETRGLMNAERLAHLPRGAKFINVARGPVVDEAALIAALRSGHIAEATLDVFEVEPLPVGSPLWAMDNVLVTPHLASIAIPRTAAPQIVENIRRIEAGEPVLNQVDPRRGY |
| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding | F | 341 | Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2) | MHHHHHHSSGVDLGTENLYFQSMNEQASGALVFYSAVDIGQDWKSALQAAHPGLDVRIARAGDGHVEGDPEEVRYALVWKPPHGFFARFPNLKLVINLGAGVDALVARDDLPDVPVTRLSDPNMSQMMASFVLFCVLRHARDIPTFERAQREGRWHYVHPRTAAEIRVGVLGLGDLGAAAALELARHGFDVRGWSRTPKALEGVSCFHGLEALPGFLAGSEIVVVMLPLTPETRGLMNAERLAHLPRGAKFINVARGPVVDEAALIAALRSGHIAEATLDVFEVEPLPVGSPLWAMDNVLVTPHLASIAIPRTAAPQIVENIRRIEAGEPVLNQVDPRRGY |
| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding | G | 341 | Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2) | MHHHHHHSSGVDLGTENLYFQSMNEQASGALVFYSAVDIGQDWKSALQAAHPGLDVRIARAGDGHVEGDPEEVRYALVWKPPHGFFARFPNLKLVINLGAGVDALVARDDLPDVPVTRLSDPNMSQMMASFVLFCVLRHARDIPTFERAQREGRWHYVHPRTAAEIRVGVLGLGDLGAAAALELARHGFDVRGWSRTPKALEGVSCFHGLEALPGFLAGSEIVVVMLPLTPETRGLMNAERLAHLPRGAKFINVARGPVVDEAALIAALRSGHIAEATLDVFEVEPLPVGSPLWAMDNVLVTPHLASIAIPRTAAPQIVENIRRIEAGEPVLNQVDPRRGY |
| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding | H | 341 | Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2) | MHHHHHHSSGVDLGTENLYFQSMNEQASGALVFYSAVDIGQDWKSALQAAHPGLDVRIARAGDGHVEGDPEEVRYALVWKPPHGFFARFPNLKLVINLGAGVDALVARDDLPDVPVTRLSDPNMSQMMASFVLFCVLRHARDIPTFERAQREGRWHYVHPRTAAEIRVGVLGLGDLGAAAALELARHGFDVRGWSRTPKALEGVSCFHGLEALPGFLAGSEIVVVMLPLTPETRGLMNAERLAHLPRGAKFINVARGPVVDEAALIAALRSGHIAEATLDVFEVEPLPVGSPLWAMDNVLVTPHLASIAIPRTAAPQIVENIRRIEAGEPVLNQVDPRRGY |
| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding | I | 341 | Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2) | MHHHHHHSSGVDLGTENLYFQSMNEQASGALVFYSAVDIGQDWKSALQAAHPGLDVRIARAGDGHVEGDPEEVRYALVWKPPHGFFARFPNLKLVINLGAGVDALVARDDLPDVPVTRLSDPNMSQMMASFVLFCVLRHARDIPTFERAQREGRWHYVHPRTAAEIRVGVLGLGDLGAAAALELARHGFDVRGWSRTPKALEGVSCFHGLEALPGFLAGSEIVVVMLPLTPETRGLMNAERLAHLPRGAKFINVARGPVVDEAALIAALRSGHIAEATLDVFEVEPLPVGSPLWAMDNVLVTPHLASIAIPRTAAPQIVENIRRIEAGEPVLNQVDPRRGY |
| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding | J | 341 | Xanthobacter Autotrophicus (Strain Atcc Baa-1158 / Py2) | MHHHHHHSSGVDLGTENLYFQSMNEQASGALVFYSAVDIGQDWKSALQAAHPGLDVRIARAGDGHVEGDPEEVRYALVWKPPHGFFARFPNLKLVINLGAGVDALVARDDLPDVPVTRLSDPNMSQMMASFVLFCVLRHARDIPTFERAQREGRWHYVHPRTAAEIRVGVLGLGDLGAAAALELARHGFDVRGWSRTPKALEGVSCFHGLEALPGFLAGSEIVVVMLPLTPETRGLMNAERLAHLPRGAKFINVARGPVVDEAALIAALRSGHIAEATLDVFEVEPLPVGSPLWAMDNVLVTPHLASIAIPRTAAPQIVENIRRIEAGEPVLNQVDPRRGY |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2017-04-10 Deposition Author(s): Almo, S.C. , Gasiorowska, O.A. , Kutner, J. , Lipowska, J. , Minor, W. , New York Structural Genomics Research Consortium (Nysgrc) , Shabalin, I.G.