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FASTA Sequence PDB Format mmCIF Format
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5V93

Cryo-em structure of the 70s ribosome from mycobacterium tuberculosis bound with capreomycin

PDB DOI: 10.2210/pdb5v93/pdb

Classification: RIBOSOME
Organism(s): Mycobacterium Tuberculosis , Streptomyces Puniceus

Deposited: 2017-03-22
Deposition Author(s): Chang, J.-Y. , Cui, Z. , Duan, L. , Huwe, C. , Jakana, J. , Li, X. , Meng, R. , Sacchettini, J. , Thongchol, J. , Yang, K. , Zhang, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.0 Å

Literature

Cryo-em structure of the 70s ribosome from mycobacterium tuberculosis bound with capreomycin

Chang, J.-Y. , Cui, Z. , Duan, L. , Huwe, C. , Jakana, J. , Li, X. , Meng, R. , Sacchettini, J. , Thongchol, J. , Yang, K. , Zhang, J.

Primary Citation of Related Structures: 5V93


Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein L32 0 57 Mycobacterium Tuberculosis , Streptomyces Puniceus MAVPKRRKSRSNTRSRRSQWKAAKTELVGVTVAGHAHKVPRRLLKAARLGLIDFDKR
30S ribosomal protein S4 D 201 Mycobacterium Tuberculosis , Streptomyces Puniceus MARYTGPVTRKSRRLRTDLVGGDQAFEKRPYPPGQHGRARIKESEYLLQLQEKQKARFTYGVMEKQFRRYYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVSHGHFNVNGVHVNVPSYRVSQYDIVDVRDKSLNTVPFQIARETAGERPIPSWLQVVGERQRVLIHQLPERAQIDVPLTEQLIVEYYSK
30S ribosomal protein S5 E 220 Mycobacterium Tuberculosis , Streptomyces Puniceus MAEQPAGQAGTTDNRDARGDREGRRRDSGRGSRERDGEKSNYLERVVAINRVSKVVKGGRRFSFTALVIVGDGNGMVGVGYGKAKEVPAAIAKGVEEARKSFFRVPLIGGTITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRKSEALAASVLPDRTI
30S ribosomal protein S6 F 96 Mycobacterium Tuberculosis , Streptomyces Puniceus MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIYVVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH
30S ribosomal protein S7 G 156 Mycobacterium Tuberculosis , Streptomyces Puniceus MPRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLKGKKSLAERIVYGALEQARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVGYSRQRREKTMIERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW
30S ribosomal protein S8 H 132 Mycobacterium Tuberculosis , Streptomyces Puniceus MTMTDPIADFLTRLRNANSAYHDEVSLPHSKLKANIAQILKNEGYISDFRTEDARVGKSLVIQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW
30S ribosomal protein S10 J 101 Mycobacterium Tuberculosis , Streptomyces Puniceus VAGQKIRIRLKAYDHEAIDASARKIVETVVRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDIIDPTPKTVDALMRIDLPASVDVNIQ
30S ribosomal protein S11 K 139 Mycobacterium Tuberculosis , Streptomyces Puniceus MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRRV
30S ribosomal protein S12 L 124 Mycobacterium Tuberculosis , Streptomyces Puniceus MPTIQQLVRKGRRDKISKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSQVEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYGAKKEKG
30S ribosomal protein S13 M 124 Mycobacterium Tuberculosis , Streptomyces Puniceus MARLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKKKAR
30S ribosomal protein S14 type Z N 61 Mycobacterium Tuberculosis , Streptomyces Puniceus MAKKALVNKAAGKPRFAVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSSW
50S ribosomal protein L33 1 55 Mycobacterium Tuberculosis , Streptomyces Puniceus MASSTDVRPKITLACEVCKHRNYITKKNRRNDPDRLELKKFCPNCGKHQAHRETR
30S ribosomal protein S15 O 89 Mycobacterium Tuberculosis , Streptomyces Puniceus MALTAEQKKEILRSYGLHETDTGSPEAQIALLTKRIADLTEHLKVHKHDHHSRRGLLLLVGRRRRLIKYISQIDVERYRSLIERLGLRR
30S ribosomal protein S16 P 162 Mycobacterium Tuberculosis , Streptomyces Puniceus MAVKIKLTRLGKIRNPQYRVAVADARTRRDGRAIEVIGRYHPKEEPSLIEINSERAQYWLSVGAQPTEPVLKLLKITGDWQKFKGLPGAQGRLKVAAPKPSKLEVFNAALAAADGGPTTEATKPKKKSPAKKAAKAAEPAPQPEQPDTPALGGEQAELTAES
30S ribosomal protein S17 Q 135 Mycobacterium Tuberculosis , Streptomyces Puniceus MAEAKTGAKAAPRVAKAAKAAPKKAAPNDAEAIGAANAANVKGPKHTPRTPKPRGRRKTRIGYVVSDKMQKTIVVELEDRMRHPLYGKIIRTTKKVKAHDEDSVAGIGDRVSLMETRPLSATKRWRLVEILEKAK
30S ribosomal protein S18 R 84 Mycobacterium Tuberculosis , Streptomyces Puniceus MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR
30S ribosomal protein S19 S 93 Mycobacterium Tuberculosis , Streptomyces Puniceus MPRSLKKGPFVDEHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTESMVGHKLGEFAPTRTFKGHIKDDRKSKRR
30S ribosomal protein S20 T 86 Mycobacterium Tuberculosis , Streptomyces Puniceus VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDKAASKGVIHKNQAANKKSALAQALNKL
50S ribosomal protein L24 U 105 Mycobacterium Tuberculosis , Streptomyces Puniceus MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTAISTTQRGARSGGIVTQEAPIHVSNVMVVDSDGKPTRIGYRVDEETGKRVRISKRNGKDI
50S ribosomal protein L25 V 215 Mycobacterium Tuberculosis , Streptomyces Puniceus MAKSASNQLRVTVRTETGKGASRRARRAGKIPAVLYGHGAEPQHLELPGHDYAAVLRHSGTNAVLTLDIAGKEQLALTKALHIHPIRRTIQHADLLVVRRGEKVVVEVSVVVEGQAGPDTLVTQETNSIEIEAEALSIPEQLTVSIEGAEPGTQLTAGQIALPAGVSLISDPDLLVVNVVKAPTAEELEGEVAGAEEAEEAAVEAGEAEAAGESE
50S ribosomal protein L27 W 86 Mycobacterium Tuberculosis , Streptomyces Puniceus MAHKKGASSSRNGRDSAAQRLGVKRYGGQVVKAGEILVRQRGTKFHPGVNVGRGGDDTLFAKTAGAVEFGIKRGRKTVSIVGSTTA
Mitochondrial domain of uncharacterised function (DUF1713) X 33 Mycobacterium Tuberculosis , Streptomyces Puniceus MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK
50S ribosomal protein L34 2 47 Mycobacterium Tuberculosis , Streptomyces Puniceus VTKGKRTFQPNNRRRARVHGFRLRMRTRAGRSIVSSRRRKGRRTLSA
50S ribosomal protein L29 Y 77 Mycobacterium Tuberculosis , Streptomyces Puniceus MAVGVSPGELRELTDEELAERLRESKEELFNLRFQMATGQLNNNRRLRTVRQEIARIYTVLRERELGLATGPDGKES
50S ribosomal protein L30 Z 65 Mycobacterium Tuberculosis , Streptomyces Puniceus MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQTGGKT
50S ribosomal protein L2 C 280 Mycobacterium Tuberculosis , Streptomyces Puniceus MAIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGRGGRNAHGRITTRHKGGGHKRAYRMIDFRRNDKDGVNAKVAHIEYDPNRTARIALLHYLDGEKRYIIAPNGLSQGDVVESGANADIKPGNNLPLRNIPAGTLIHAVELRPGGGAKLARSAGSSIQLLGKEASYASLRMPSGEIRRVDVRCRATVGEVGNAEQANINWGKAGRMRWKGKRPSVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRNANKSSNKFIVRRRRTGKKHSR
50S ribosomal protein L35 3 64 Mycobacterium Tuberculosis , Streptomyces Puniceus MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTSLLNG
30S ribosomal protein S9 I 151 Mycobacterium Tuberculosis , Streptomyces Puniceus MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR
50S ribosomal protein L36 4 37 Mycobacterium Tuberculosis , Streptomyces Puniceus VKVNPSVKPICDKCRLIRRHGRVMVICSDPRHKQRQG
50S ribosomal protein L31 6 80 Mycobacterium Tuberculosis , Streptomyces Puniceus MKSDIHPAYEETTVVCGCGNTFQTRSTKPGGRIVVEVCSQCHPFYTGKQKILDSGGRVARFEKRYGKRKVGADKAVSTGK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
23S rRNA a 3138 NA UUGUAAGUGUCUAAGGGCGCAUGGUGGAUGCCUUGGCAUCGAGAGCCGAUGAAGGACGUGGGAGGCUGCGAUAUGCCUCGGGGAGCUGUCAACCGAGCGUGGAUCCGAGGAUUUCCGAAUGGGGAAACCCAGCACGAGUGAUGUCGUGCUACCCGCAUCUGAAUAUAUAGGGUGCGGGAGGGAACGCGGGGAAGUGAAACAUCUCAGUACCCGUAGGAGGAGAAAACAAUUGUGAUUCCGCAAGUAGUGGCGAGCGAACGCGGAACAGGCUAAACCGCACGCAUGGGUAACCGGGUAGGGGUUGUGUGUGCGGGGUUGUGGGAGGAUAUGUCUCAGCGCUACCCGGCUGAGAGGCAGUCAGAAAGUGUCGUGGUUAGCGGAAGUGGCCUGGGAUGGUCUGCCGUAGACGGUGAGAGCCCGGUACGCGAAAACCCGGCACCUGCCUAGUAUCAAUUCCCGAGUAGCAGCGGGCCCGUGGAAUCCGCUGUGAAUCCGCCGGGACCACCCGGUAAGCCUAAAUACUCCUCGAUGACCGAUAGCGGAUUAGUACCGUGAGGGAAUGGUGAAAAGUACCCCGGGAGGGGAGUGAAAGAGUACCUGAAACCGUGUGCCUACAAUCCGUCAGAGCCUCCUUUUCCUCUCCGGAGGAGGGUGGUGAUGGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUCAGGGACAUGUCGCAAGGUUAACCCGUGUGGGGUAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGACCCACACGCGCAUACGCGCGUGUGAAUAGUGGCGUGUUCUGGACCCGAAGCGGAGUGAUCUACCCAUGGCCAGGGUGAAGCGCGGGUAAGACCGCGUGGAGGCCCGAACCCACUUAGGUUGAAGACUGAGGGGAUGAGCUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUUGCGUGGUUCACCGCGGAGGUAGAGCUACUGGAUGGCCGAUGGGCCCUACUAGGUUACUGACGUCAGCCAAACUCCGAAUGCCGUGGUGUAAAGCGUGGCAGUGAGACGGCGGGGGAUAAGCUCCGUACGUCGAAAGGGAAACAGCCCAGAUCGCCGGCUAAGGCCCCCAAGCGUGUGCUAAGUGGGAAAGGAUGUGCAGUCGCAAAGACAACCAGGAGGUUGGCUUAGAAGCAGCCACCCUUGAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUGUGCGCCGAUAAUGUAGCGGGGCUCAAGCACACCGCCGAAGCCGCGGCACAUCCACCUUGUGGUGGGUGUGGGUAGGGGAGCGUCCCUCAUUCAGCGAAGCCACCGGGUGACCGGUGGUGGAGGGUGGGGGAGUGAGAAUGCAGGCAUGAGUAGCGACAAGGCAAGUGAGAACCUUGCCCGCCGAAAGACCAAGGGUUCCUGGGCCAGGCCAGUCCGCCCAGGGUGAGUCGGGACCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGACAACGGGUUGAUAUUCCCGUACCCGUGUGUGGGCGCCCGUGACGAAUCAGCGGUACUAACCACCCAAAACCGGAUCGAUCACUCCCCUUCGGGGGUGUGGAGUUCUGGGGCUGCGUGGGAACUUCGCUGGUAGUAGUCAAGCGAAGGGGUGACGCAGGAAGGUAGCCGUACCAGUCAGUGGUAACACUGGGGCAAGCCGGUAGGGAGAGCGAUAGGCAAAUCCGUCGCUCACUAAUCCUGAGAGGUGACGCAUAGCCGGUUGAGGCGAAUUCGGUGAUCCUCUGCUGCCAAGAAAAGCCUCUAGCGAGCACACACACGGCCCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGCAUACCAAGGCGUACGAGAUAACUAUGGUUAAGGAACUCGGCAAAAUGCCCCCGUAACUUCGGGAGAAGGGGGACCGGAAUAUCGUGAACACCCUUGCGGUGGGAGCGGGAUCCGGUCGCAGAAACCAGUGAGGAGCGACUGUUUACUAAAAACACAGGUCCGUGCGAAGUCGCAAGACGAUGUAUACGGACUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGACCCGUUAACCCGCAAGGGUGAAGCGGAGAAUUUAAGCCCCAGUAAACGGCGGUGGUAACUAUAACCAUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACUUCUCAACUGUCUCAACCAUAGACUCGGCGAAAUUGCACUACGAGUAAAGAUGCUCGUUACGCGCGGCAGGACGAAAAGACCCCGGGACCUUCACUACAACUUGGUAUUGAUGUUCGGUACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAACCUCGACGCCAGUUGGGGCGGAGUCGUUGUUGAAAUACCACUCUGAUCGUAUUGGGCAUCUAACCUCGAACCCUGAAUCGGGUUUAGGGACAGUGCCUGGCGGGUAGUUUAACUGGGGCGGUUGCCUCCUAAAAUGUAACGGAGGCGCCCAAAGGUUCCCUCAACCUGGACGGCAAUCAGGUGGCGAGUGUAAAUGCACAAGGGAGCUUGACUGCGAGACUUACAAGUCAAGCAGGGACGAAAGUCGGGAUUAGUGAUCCGGCACCCCCGAGUGGAAGGGGUGUCGCUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGCAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCCGCGCGCGUCAGAAACUUGAGGAAACCUGUCCCUAGUACGAGAGGACCGGGACGGACGAACCUCUGGUGCACCAGUUGUCCCGCCAGGGGCACCGCUGGAUAGCCACGUUCGGUCAGGAUAACCGCUGAAAGCAUCUAAGCGGGAAACCUUCUCCAAGAUCAGGUUUCUCACCCACUUGGUGGGAUAAGGCCCCCCGCAGAACACGGGUUCAAUAGGUCAGACCUGGAAGCUCAGUAAUGGGUGUAGGGAACUGGUGCUAACCGGCCGAAAACUUACAACA
5S rRNA b 115 NA UUACGGCGGCCACAGCGGCAGGGAAACGCCCGGUCCCAUUCCGAACCCGGAAGCUAAGCCUGCCAGCGCCGAUGAUACUGCCCCUCCGGGUGGAAAAGUAGGACACCGCCGAACA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-03-22
Deposition Author(s): Chang, J.-Y. , Cui, Z. , Duan, L. , Huwe, C. , Jakana, J. , Li, X. , Meng, R. , Sacchettini, J. , Thongchol, J. , Yang, K. , Zhang, J.