5V7J
Crystal structure at 3.7 a resolution of glycosylated hiv-1 clade a bg505 sosip.664 prefusion env trimer with four glycans (n197, n276, n362, and n462) removed in complex with neutralizing antibodies 3h+109l and 35o22.
PDB DOI: 10.2210/pdb5v7j/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1
Deposited: 2017-03-20 Deposition Author(s): Kwong, P.D. , Stewart-Jones, G.B.E. , Zhou, T.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.907 Å
Crystal structure at 3.7 a resolution of glycosylated hiv-1 clade a bg505 sosip.664 prefusion env trimer with four glycans (n197, n276, n362, and n462) removed in complex with neutralizing antibodies 3h+109l and 35o22.
Kwong, P.D. , Stewart-Jones, G.B.E. , Zhou, T.
Primary Citation of Related Structures: 5V7J
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Envelope glycoprotein gp160 | G | 480 | Homo Sapiens , Human Immunodeficiency Virus 1 | ENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENIANNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSAGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSATETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
| Envelope glycoprotein gp160 | B | 153 | Homo Sapiens , Human Immunodeficiency Virus 1 | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| Antibody 3H+109L Fab light chain | L | 218 | Homo Sapiens , Human Immunodeficiency Virus 1 | GSVTSYVRPLSVALGETASISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS |
| Antibody 3H+109L Fab heavy chain | H | 236 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVQLQESGPGLVKPSETLSLTCTVSGGSISNYYWSWIRQSPGKGLEWIGYISDSESTNYNPSLKSRVIISVDTSKNQLSLKLNSVTAADSAIYYCARAQQGKRIYGMVSFGEFFYYYYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD |
| Antibody 35O22 Fab light chain | D | 240 | Homo Sapiens , Human Immunodeficiency Virus 1 | EGQLVQSGAELKKPGASVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVIMTTDTEVPVTSFTSTGAAYMEIRNLKFDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKGLEV |
| Antibody 35O22 Fab heavy chain | E | 216 | Homo Sapiens , Human Immunodeficiency Virus 1 | QSVLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQSKANPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2017-03-20 Deposition Author(s): Kwong, P.D. , Stewart-Jones, G.B.E. , Zhou, T.