5UQY
Crystal structure of marburg virus gp in complex with the human survivor antibody mr78
PDB DOI: 10.2210/pdb5uqy/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87)
Deposited: 2017-02-08 Deposition Author(s): Bomholdt, Z.A. , Crowe, J.E. , Flyak, A.I. , Fusco, M.L. , Hammel, M. , Hashiguchi, T. , Hastie, K.M. , Kohda, D. , Lee, J.E. , Matsuoka, R. , Saphire, E.O. , Yanagi, Y.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.6 Å
Crystal structure of marburg virus gp in complex with the human survivor antibody mr78
Bomholdt, Z.A. , Crowe, J.E. , Flyak, A.I. , Fusco, M.L. , Hammel, M. , Hashiguchi, T. , Hastie, K.M. , Kohda, D. , Lee, J.E. , Matsuoka, R. , Saphire, E.O. , Yanagi, Y.
Primary Citation of Related Structures: 5UQY
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| ENVELOPE GLYCOPROTEIN GP1 | A | 250 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | KTLPVLEIASNSQPQDVDSVCSGTLQKTEDVHLMGFTLSGQKVADSPLEASKRWAFRTGVPPKNVEYTEGEEAKTCYNISVTDPSGKSLLLDPPSNIRDYPKCKTVHHIQGQNPHAQGIALHLWGAFFLYDRVASTTMYRGKVFTEGNIAAMIVNKTVHRMIFSRQGQGYRHMNLTSTNKYWTSSNETQRNDTGCFGILQEYNSTNNQTCPPSLKPPSLPTVTPSIHSTNTQINTAKSGTRPPIYFRKKR |
| ENVELOPE GLYCOPROTEIN GP1 | E | 250 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | KTLPVLEIASNSQPQDVDSVCSGTLQKTEDVHLMGFTLSGQKVADSPLEASKRWAFRTGVPPKNVEYTEGEEAKTCYNISVTDPSGKSLLLDPPSNIRDYPKCKTVHHIQGQNPHAQGIALHLWGAFFLYDRVASTTMYRGKVFTEGNIAAMIVNKTVHRMIFSRQGQGYRHMNLTSTNKYWTSSNETQRNDTGCFGILQEYNSTNNQTCPPSLKPPSLPTVTPSIHSTNTQINTAKSGTRPPIYFRKKR |
| ENVELOPE GLYCOPROTEIN GP1 | I | 250 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | KTLPVLEIASNSQPQDVDSVCSGTLQKTEDVHLMGFTLSGQKVADSPLEASKRWAFRTGVPPKNVEYTEGEEAKTCYNISVTDPSGKSLLLDPPSNIRDYPKCKTVHHIQGQNPHAQGIALHLWGAFFLYDRVASTTMYRGKVFTEGNIAAMIVNKTVHRMIFSRQGQGYRHMNLTSTNKYWTSSNETQRNDTGCFGILQEYNSTNNQTCPPSLKPPSLPTVTPSIHSTNTQINTAKSGTRPPIYFRKKR |
| ENVELOPE GLYCOPROTEIN GP1 | M | 250 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | KTLPVLEIASNSQPQDVDSVCSGTLQKTEDVHLMGFTLSGQKVADSPLEASKRWAFRTGVPPKNVEYTEGEEAKTCYNISVTDPSGKSLLLDPPSNIRDYPKCKTVHHIQGQNPHAQGIALHLWGAFFLYDRVASTTMYRGKVFTEGNIAAMIVNKTVHRMIFSRQGQGYRHMNLTSTNKYWTSSNETQRNDTGCFGILQEYNSTNNQTCPPSLKPPSLPTVTPSIHSTNTQINTAKSGTRPPIYFRKKR |
| ENVELOPE GLYCOPROTEIN GP2 | B | 237 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | SILAKEGDIGPNLDGLINTEIDFDPIPNTETIFDESPSFNTSTNEEQHTPPNISLTFSYFPDKNGDTAYSGENENDCDAELRIWSVQEDDLAAGLSWIPFFGPGIEGLYTAGLIKNQNNLVCRLRRLANQTAKSLELLLRVTTEERTFSLINRHAIDFLLTRWGGTCKVLGPDCCIGIEDLSKNISEQIDKIRKDEQKEETGDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK |
| ENVELOPE GLYCOPROTEIN GP2 | F | 237 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | SILAKEGDIGPNLDGLINTEIDFDPIPNTETIFDESPSFNTSTNEEQHTPPNISLTFSYFPDKNGDTAYSGENENDCDAELRIWSVQEDDLAAGLSWIPFFGPGIEGLYTAGLIKNQNNLVCRLRRLANQTAKSLELLLRVTTEERTFSLINRHAIDFLLTRWGGTCKVLGPDCCIGIEDLSKNISEQIDKIRKDEQKEETGDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK |
| ENVELOPE GLYCOPROTEIN GP2 | J | 237 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | SILAKEGDIGPNLDGLINTEIDFDPIPNTETIFDESPSFNTSTNEEQHTPPNISLTFSYFPDKNGDTAYSGENENDCDAELRIWSVQEDDLAAGLSWIPFFGPGIEGLYTAGLIKNQNNLVCRLRRLANQTAKSLELLLRVTTEERTFSLINRHAIDFLLTRWGGTCKVLGPDCCIGIEDLSKNISEQIDKIRKDEQKEETGDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK |
| ENVELOPE GLYCOPROTEIN GP2 | N | 237 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | SILAKEGDIGPNLDGLINTEIDFDPIPNTETIFDESPSFNTSTNEEQHTPPNISLTFSYFPDKNGDTAYSGENENDCDAELRIWSVQEDDLAAGLSWIPFFGPGIEGLYTAGLIKNQNNLVCRLRRLANQTAKSLELLLRVTTEERTFSLINRHAIDFLLTRWGGTCKVLGPDCCIGIEDLSKNISEQIDKIRKDEQKEETGDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK |
| MR78 Fab light chain | C | 211 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | DIQMTQSPSSLSASVGDRVTITCQASQVISNYLNWYQQKPGKAPKLLIYDTSNLKTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYENLQFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNR |
| MR78 Fab light chain | G | 211 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | DIQMTQSPSSLSASVGDRVTITCQASQVISNYLNWYQQKPGKAPKLLIYDTSNLKTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYENLQFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNR |
| MR78 Fab light chain | K | 211 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | DIQMTQSPSSLSASVGDRVTITCQASQVISNYLNWYQQKPGKAPKLLIYDTSNLKTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYENLQFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNR |
| MR78 Fab light chain | O | 211 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | DIQMTQSPSSLSASVGDRVTITCQASQVISNYLNWYQQKPGKAPKLLIYDTSNLKTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYENLQFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNR |
| MR78 Fab heavy chain | D | 226 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSVYYSGGASYNPSLKSRATISVDTSKNQFSLNLDSVSAADTAIYYCASIYGSGTFYYYFYMDVWGKGSTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
| MR78 Fab heavy chain | H | 226 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSVYYSGGASYNPSLKSRATISVDTSKNQFSLNLDSVSAADTAIYYCASIYGSGTFYYYFYMDVWGKGSTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
| MR78 Fab heavy chain | L | 226 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSVYYSGGASYNPSLKSRATISVDTSKNQFSLNLDSVSAADTAIYYCASIYGSGTFYYYFYMDVWGKGSTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
| MR78 Fab heavy chain | P | 226 | Homo Sapiens , Lake Victoria Marburgvirus (Strain Ravn-87) | QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSVYYSGGASYNPSLKSRATISVDTSKNQFSLNLDSVSAADTAIYYCASIYGSGTFYYYFYMDVWGKGSTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2017-02-08 Deposition Author(s): Bomholdt, Z.A. , Crowe, J.E. , Flyak, A.I. , Fusco, M.L. , Hammel, M. , Hashiguchi, T. , Hastie, K.M. , Kohda, D. , Lee, J.E. , Matsuoka, R. , Saphire, E.O. , Yanagi, Y.