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5UMD

Structure of the plasmodium falciparum 80s ribosome bound to the antimalarial drug mefloquine

PDB DOI: 10.2210/pdb5umd/pdb

Classification: RIBOSOME
Organism(s): Clostridium Botulinum C Phage

Deposited: 2017-01-27
Deposition Author(s): Bai, X.-C. , Baum, J. , Brown, A. , Scheres, S. , Wong, W.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

5umd
Literature

Structure of the plasmodium falciparum 80s ribosome bound to the antimalarial drug mefloquine

Bai, X.-C. , Baum, J. , Brown, A. , Scheres, S. , Wong, W.

Primary Citation of Related Structures: 5UMD


Proteins
Molecule Chains Sequence Length Organism Sequence
60S ribosomal protein L34 A 150 Clostridium Botulinum C Phage MAQRVHYRRHNHYNTKSNKVRPVRTPGGKLTIHVVKKKAGKPKCADCKTAIQGVKALRPADNYRARRKNRTVARAYGGSICARCIRERIMRAFLFEEQKCVRQVLKEKKKQEKKVKKVKKEKKKVNAKEVKKTATDNKKAKKVADKKKGK
60S ribosomal protein L7-3, putative J 283 Clostridium Botulinum C Phage MAKDKKQQKKPSKKTPAPCPLSTKVTVKKEIKKEKKTGIKDNPLIFEKKKRSNIIGVGVRPKKDLSKYVKWPRYIRIQRKKKILLQRLKVPPSINQFNHTLPKSQTQDLLNFLKAYKPESKTDKKQRLLNKAKEALNKNITKDKKPLFLKYGINHITKLVENKKANLVVIANDVSPIELVLFLPALCRLKEVPYCIVKDKATLGKLVHKKTATAVCLESVKKEDQEKLDYFAKVCKENFNDNVDLRRKWGGQKMSAKSMLLKKMKDKARKIEEAKKKEISAKL
60S ribosomal protein L13, putative K 202 Clostridium Botulinum C Phage MYKKEYVIDCKGHLLGRLASLIAKELLNGQRIVAVRCEDINISGSLYRNKLKYQEFLRLRTNTNPKKGPLHLREPSKILWRCVRGMLPHKTYKGQLALKKLKVCVGMPYPYDKKKKYVLPSALRAFRLKKHRRYCRLGTLSSRVGWNYDTLVKKNEVLRKQVSKAYYKKKVNNLNEKKEIKTEALNLINPEQRQVLENFGYA
60S ribosomal protein L13 L 215 Clostridium Botulinum C Phage MVAHNNVLPNVHLHKWWQHRVRVNFSKNIKKKKRRLLREKRRKANGGTPIEKLHPIVHCPTQRYNFRTRLGKGFTFEELKGAGLTPRAAQTIGICYDKRRKNRSEESLTKNVERLLKYKNSLVMIPLKKNKAKKGIGGIPADADKNTIKEFRNKKPLLSIFKKEKNTKPFYETIEVSKIDKEFLAYKTLRRAKLAERRKNCRQQKKDIKFKSKDN
60S ribosomal protein L23, putative M 139 Clostridium Botulinum C Phage MKRGRAGTLKNKMRITLSLPVGALINCCDNSGGKNLYIIAVQGFGSCLNRLPAASLGDMVLATVKKGKPDLRKKVLNAIICRQSKAWRRHEGYYIYFEDNAGVIVNPKGEMKGSAITGPVARECAELWPKLSSAASAIV
60S ribosomal protein L14, putative N 165 Clostridium Botulinum C Phage MPRVELTEEEKLYISKKNLLFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGAFITGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQKVKA
60S ribosomal protein L27a, putative O 148 Clostridium Botulinum C Phage MATRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGLHHMRINFDKYHPGYFGKVGMRHLNLLKNRTYCPTINVDKLWGLLPEEKKKEFSENKDIAPVIDVTRKGYFKVLGNGKLKHNQPIVVKARYFSSVAEKKIKAVGGQCILVA
Ribosomal protein L15 P 205 Clostridium Botulinum C Phage MGAYKYIQEIWKKKQSDAMHFLLRVRTWEYRQLPVVHRVSKPSRPDKARRLGYKAIQGFVIYRVRVRRGDRKKRVKKGIVHGKPKHQGVHKQKSTRNLKSVAEGKVGKSICGNLRVLNSYWVGQDAVYKYYEVILVDPNHNAVRNNPKINWICNPVHKHRELRGLTSAGKKYRGLRVKGHLSAKSRPSIRANWKRRQLIKLRKCR
60S ribosomal protein L10, putative Q 219 Clostridium Botulinum C Phage MGRRPARCYRYCKNKPYPKSRYCRGVPDPKIRIYDMGRKKADVNEFSGVVHLVSYEYEQISSEALEAARISANKYMITNCGKDNFHLRVRIHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGVVARVDIGQVLLSIRTKENFVSKACEALRRAKYKFPGRQKVFVSNKWGFTPFSKDEYQQYKKKGRIISDGVSCKFIREKGPLDKIYKDINTVLES
60S ribosomal protein L5, putative R 294 Clostridium Botulinum C Phage MAYVKVVKNKAYFKRYQVKYRRRREGKTDYRARKALILQDKNKYNAQKLRFVVRKTNSQVICQIACAHIEGDKILAEAKSKELIRYGIPVGLKNYAAAYATGLLCARRFLKSLNLDTQFLGVEKVTGEIENNEDKEDEEGRKPIKAFLDVGITRTTTGNRVFAALKGACDGGLNIPHGNNRFPGSKNEFNPEQLRKNILGIHVAEYMKTLQEEDNDKYKTHFNDYLKNNIGADDIEQMYLNAHEKIRQNPEKESKDTKNVKKFVSKHEKPKKLNAKLRKKRVKEKLALYVEKLQ
60S ribosomal protein L18-2, putative S 187 Clostridium Botulinum C Phage MGIALKNVGRIKKHGRKHLVSKNPYLRLLVKLYNFLARRTNANFNKIIAKRLIMPKRYRPPLSLSKLQYHMANHPNDIAVVVGSITDDKRLFSLKQLKVCALRFTETARKRIEDAGGECLTFDQLALKYPTGKKCVLLRGPTKARTAEKHFGKAPGKPKSKARPYVRSKGRKFEKARGRRKSRAYKK
60S ribosomal protein L36 B 112 Clostridium Botulinum C Phage MGRKSTIKPATGIAVGFNSGHVVTKRNLKLHKKKKPFSKRKELIKDVVREITGFSPYEKRIIELIKIGTSASTKRSLKYAKKKLGTHKRGKAKREEIQKVVILQRRKAAEKH
60S ribosomal protein L19 T 182 Clostridium Botulinum C Phage MSLTLQKRLAASVLKCGKNKIWMDPNEISEISLANSRFSIRKLYKEGLILKKPQKVHSRARVRLYKLAKRKGRHMGIGKRKGTKNARTNQKTLWIKRQRVLRRLLKRLRDSKKVDRHLYHSFYLKCKGNQFKNKRTLIEAIQREKNETLKKKAIADQLEAKRLKAQVLRNKRKLKKDKEVVA
60S ribosomal protein L18a U 184 Clostridium Botulinum C Phage MVKKIDNSLNTNIHQYHIVGRAIPTAKDKNPNVYRMCIFAKNDTNAKSRFWYFMKKINKLKKSNGELLACEQIKERFPLRVKNYGVLLRYDSRTGTHNMYKEFRDTTKEGAIAQLYSEMAGRHRARASSINIIRISEISSSLVRRPHIKQLLKRRLRFPALHLPTLQKEYRKKFASKRPSTYRM
60S ribosomal protein L21 V 161 Clostridium Botulinum C Phage MGGKSRGKRSGTRYKFSKKFRKHGECTANKYLEKLNYGDYVDIVCDSTQQKGMPFNYYHGKTGKIFHITKRGVGVLVNKRVKHRIEQKKVCVRIEHVRKSRCNEDFLLRKIKNAELIKEAKLKNEHINIKRKTEGPKPAAMIKVPPSKIITIEPLPFYEEY
60S ribosomal protein L17, putative W 203 Clostridium Botulinum C Phage MVKYAKKIRNLGKCAKGAGVDLRVHFKNTYEAARAIRRMKLLEAKKYLNDVIEKKRCVPFRKYNGGVGRTNQAKEFNHTQGRWPAKSCKFLLNILDNVQANAESRNLDVSKLRLIHVMVNKARPGRRRTYKAHGRINPFMSSPCHIQIIAREINKPAKKSLLSNAEKQKKLPFKVTLKKLIKLNISNQNRLKNKSVKKQQTVQ
60S ribosomal protein L22, putative X 139 Clostridium Botulinum C Phage MVAKKDSTKVSKKLKKKVVKKTKIVKGLKKQKMNKSTKGIKYVLDCTKPVKDTILDISGLEQFFKDKIKVDKKTNNLKNKVVVTSDEYKIYITVHIPFSKRYIKYLAKKYIKMHQIRDFLRVIAKGKLAYEFKYFQLNN
60S ribosomal protein L23 Y 190 Clostridium Botulinum C Phage MTQVEKKKKNVKNVNKHKIIHKRVIKKGNRKYTNGNTKVKYRKQVVKKTINKNVSKKKLLKENVDKDEKKKKMKISIRFKKPKTLIYARNPKCPRIVKSCHSKTLDKYGLIKYPLTSEKAMKKIEEINTLVFMCDKRANKKNIKKSVKNLFGIECDKVNVLNTLNGDKKAYVRLSGEHDALEVANKIGIL
60S ribosomal protein L26, putative Z 126 Clostridium Botulinum C Phage MKFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN
60S ribosomal protein L24, putative 0 162 Clostridium Botulinum C Phage MSQIKTTVKTEACSFSEYRIYPGRGQKYIARDGKVYFYLSSKFASLALQKKKAAKLRWTQTWRRNNKKTKIETTQRRRYKKTIKVQKAVCGLTVEDIRNRKAYVQSIEAKNKAKFGTKEKEDKKKTKDDKKKNLVHFQQKKDFTKSKMLNMAKSKMHKMMKK
60S ribosomal protein L27 1 146 Clostridium Botulinum C Phage MGKLLKPGKVIIILNGRRAGKKAVIVNTYEGQTRERPYSYCLVAGIEKHPLKVNKSMTKKKIVKRSKVKAFIKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTGEVSKDISFLHKKLYF
60S ribosomal protein L28 2 127 Clostridium Botulinum C Phage MSNVSNALVWELTRKSNCFIKKNKAGKKGVFLCDPLNVNYKNTPSSSGLVKSNSTNVTLKDGKVVFSVKTSKESNVVNQHFKAKNMKNVEKLLQQHGSFEKAKNKEKLLKKYKRLSKLYETSHKKTN
Ribosomal protein L37 C 92 Clostridium Botulinum C Phage MGKAGKGTGSFGKRNGKTHFLCLRCGKRSYHLQKKKCASCGYPSAKKRRFNWSVKAKRRNTTGTGRCRYIKTLRRKLKNKFTEGSTPKPKQR
60S ribosomal protein L35, putative 3 124 Clostridium Botulinum C Phage MSNVKAYELRTLKKKELLDKLDELKKELSGLRISKALGNSAKNSKIHGVRKNVARVLTVYNQKRKMELRQLYKNKKFKPYNLRKKLTKNKRLQLSPKQKAAMTLRQKKKVQNFPQRKYLVVHKE
60S ribosomal protein L29, putative 4 67 Clostridium Botulinum C Phage MAKSKNHTNHNQNRKAHKNGIKKPKKHKFMSRKGLDPNFFRNQKYCLKGIQKKKKELKLKAKQEKNN
60S ribosomal protein L7, putative 5 257 Clostridium Botulinum C Phage MADRYENQVENELGKSMTSLRAKKVNKNKELKQAAAKKIKTLKLINKKKRNDLRQRTLRYEEEYESERKKIIELKREARKNNCFYREAEKKVVFVIRLKGVNKLPPKVRSVFRLLRLLQVHNGVFVKVNKATKEMLKIVEPYVTYGYPTLSTVRKLLYKRGYVRVGKVRRYARKKIQDNADISKHLGKYNVHGIEDMVYQLYTCGPVFKKVNNFLWAFKLKPPRKGFKAKRHAFNEPRPGDWGNREAHINELINRMI
60S ribosomal protein L30e, putative 6 108 Clostridium Botulinum C Phage MAKKSKKSAGDNINAKLQLVMKSGKYQFGRKSCLKALRTGKGKLVIVSSNCPSIQRSVIEYYAMLSKCGVHDYHGDNNDLGTACGKLFRISCLVITDVGDSDIIKTNE
60S ribosomal protein L31 7 120 Clostridium Botulinum C Phage MVKGTVKKQKKTLKPVTKFITINLSKLTHKVCYKRKAPRAIKEIRSIAGKLMHTKDVRLDVKLNKFIWSKGVRNPPKRVRVKLERKRNEDEDSKEKMYTIVEHVMVDSYKGLVNECEANE
60S ribosomal protein L32 8 131 Clostridium Botulinum C Phage MAVKKVGKIIKKRTKKFTRFQSNRFMRVKPAWRKPRGIDCRVRRRYKGTNLMPSIGYGSNKKTKFLLPNNKYKYVVKNVKEMEPLIMNHTKYCVQIAHNVSSKKRKQIIERAKQMNVSVINAKARLQKTEE
60S ribosomal protein L35Ae, putative 9 140 Clostridium Botulinum C Phage MENVKVKKEQTEVSQKKKVVKKVLKKNKKTSNKKLQAVRLYEKGVILGYKRSQRNQDPNFTLISIKNVNTKKHAQFYVGKRVAYVYRTTKHHDGVKIKCIWGKVCRTHGNSGVIRAKFKTHIPPKAFGDRVRILMYPSNI
60S ribosomal protein L38 D 87 Clostridium Botulinum C Phage MPKQITDIRKFLKISRKPDTTAVIIMKKKSKTKKNTVITKLKLRTKKYLYTMVFADRKKAERIENSLLPSLKRIYYPQKKVGKTVKK
60S ribosomal protein L3 E 386 Clostridium Botulinum C Phage MSHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREVDKPGSKLHKKEIVEACTIIECAPMVVVGIVGYRETPKGLRILSTVWANHVSDEFRRRYYKNWYKSEKKAFTKSLNVPEATKNCLLKRIEKYCTVLRAICHTQPSKTPLRMKKAHIMEVQINGGSMKEKLEFVKEMLEKNLPVSTVFNPNEMIDVISVTKGHGTKGVVSRYGVKRLPRKTHRGLRKVACIGAWHPARVQFQIPRHGQKGYFHRTERNKKIYRIGLKTDKNSASTDADITEKKITPMGGFPHYGVVNEDFLLLKGCVAGTKKRPITLRKNIVPQVSRDALAQVSLKFIDTSSKIGHGRFQTSEEKVKYYGPLKKDLKA
60S ribosomal protein L4 F 411 Clostridium Botulinum C Phage MATIRPVANVYSTNGKNVVGEVEIPVVFQTPIRNDLIQSVYTNMSKNRRHPYAVKLGAGYETSAESWGTGRAVARIPRVPGGGTHRAGQGAFGNMCRGGGMFNPTKIWRRWGRKVNLKEKRYAVCSSIAASGVTSLVLARGHRISHLKEVPLVVSNDIESLSKTKEAVNFLVSLGLKDEVNRLVKSKKIRAGKGKMRNRKYKIRNGPLIIYENDNGVKKAFRNIPGVDLCKVTKLNLLKLAPGGSIGRLCIWSESAFKKLDVIYGKIHEKKVTKKNYILPKSIVHNPDIYRIIHSDKVQASLLAKKKPCKKRLQNKNSLTNFAVRCRLNPAYKLLRSLAVLRMRKSILEKSKNKKEKRVQKQIQKKELQKINHDYYKGVAKAVKKKKKREEKKAKSKKTANQAVINVAAEE
60S ribosomal protein L11a, putative G 173 Clostridium Botulinum C Phage MENKEQNVMREIKVNKLVLNICVGESGDRLTRAARVLEQLTEQKPIFGKCRFTIRSFGVRRNEKISCFVTVRGKKALEILEKGLKVKEYELRRKNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVHLSRSGYRVTRRTRRRSKISKTHKVTKEDAMKWFQTKFDGILLK
60S ribosomal protein L6, putative H 190 Clostridium Botulinum C Phage MKTIVSTQKVLIPEGVKVAINARKVTVSGKYGTLRRSFRHLPIDIRLNKLKKYIKVVMWFGVPDSLACIRTVCTHLKNMFTGVTKKFLYKMRLVHAHFPINSNIVDNNTRIEIRNYLGEKSVRFVKALPGVVIEKSPNVKDEIYVSGADIENVSLTAALIHQSVLCRNKDIRKFLDGIYVSEVTTVEKDE
60S ribosomal protein L6-2, putative I 221 Clostridium Botulinum C Phage MTNTSNELKHYNVKGKKKVLVPVNAKKTINKKYFGRKVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNKVFAHYLKSKFTLRNDMVLHKMKF
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-01-27
Deposition Author(s): Bai, X.-C. , Baum, J. , Brown, A. , Scheres, S. , Wong, W.