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5UMD

Structure of the plasmodium falciparum 80s ribosome bound to the antimalarial drug mefloquine

PDB DOI: 10.2210/pdb5umd/pdb

Classification: RIBOSOME
Organism(s): Plasmodium Falciparum 3D7

Deposited: 2017-01-27
Deposition Author(s): Bai, X.-C. , Baum, J. , Brown, A. , Scheres, S. , Wong, W.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

5umd
Literature

Structure of the plasmodium falciparum 80s ribosome bound to the antimalarial drug mefloquine

Bai, X.-C. , Baum, J. , Brown, A. , Scheres, S. , Wong, W.

Primary Citation of Related Structures: 5UMD


Proteins
Molecule Chains Sequence Length Organism Sequence
60S ribosomal protein L34 A 150 Plasmodium Falciparum 3D7 MAQRVHYRRHNHYNTKSNKVRPVRTPGGKLTIHVVKKKAGKPKCADCKTAIQGVKALRPADNYRARRKNRTVARAYGGSICARCIRERIMRAFLFEEQKCVRQVLKEKKKQEKKVKKVKKEKKKVNAKEVKKTATDNKKAKKVADKKKGK
60S ribosomal protein L7-3, putative J 283 Plasmodium Falciparum 3D7 MAKDKKQQKKPSKKTPAPCPLSTKVTVKKEIKKEKKTGIKDNPLIFEKKKRSNIIGVGVRPKKDLSKYVKWPRYIRIQRKKKILLQRLKVPPSINQFNHTLPKSQTQDLLNFLKAYKPESKTDKKQRLLNKAKEALNKNITKDKKPLFLKYGINHITKLVENKKANLVVIANDVSPIELVLFLPALCRLKEVPYCIVKDKATLGKLVHKKTATAVCLESVKKEDQEKLDYFAKVCKENFNDNVDLRRKWGGQKMSAKSMLLKKMKDKARKIEEAKKKEISAKL
60S ribosomal protein L13, putative K 202 Plasmodium Falciparum 3D7 MYKKEYVIDCKGHLLGRLASLIAKELLNGQRIVAVRCEDINISGSLYRNKLKYQEFLRLRTNTNPKKGPLHLREPSKILWRCVRGMLPHKTYKGQLALKKLKVCVGMPYPYDKKKKYVLPSALRAFRLKKHRRYCRLGTLSSRVGWNYDTLVKKNEVLRKQVSKAYYKKKVNNLNEKKEIKTEALNLINPEQRQVLENFGYA
60S ribosomal protein L13 L 215 Plasmodium Falciparum 3D7 MVAHNNVLPNVHLHKWWQHRVRVNFSKNIKKKKRRLLREKRRKANGGTPIEKLHPIVHCPTQRYNFRTRLGKGFTFEELKGAGLTPRAAQTIGICYDKRRKNRSEESLTKNVERLLKYKNSLVMIPLKKNKAKKGIGGIPADADKNTIKEFRNKKPLLSIFKKEKNTKPFYETIEVSKIDKEFLAYKTLRRAKLAERRKNCRQQKKDIKFKSKDN
60S ribosomal protein L23, putative M 139 Plasmodium Falciparum 3D7 MKRGRAGTLKNKMRITLSLPVGALINCCDNSGGKNLYIIAVQGFGSCLNRLPAASLGDMVLATVKKGKPDLRKKVLNAIICRQSKAWRRHEGYYIYFEDNAGVIVNPKGEMKGSAITGPVARECAELWPKLSSAASAIV
60S ribosomal protein L14, putative N 165 Plasmodium Falciparum 3D7 MPRVELTEEEKLYISKKNLLFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGAFITGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQKVKA
60S ribosomal protein L27a, putative O 148 Plasmodium Falciparum 3D7 MATRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGLHHMRINFDKYHPGYFGKVGMRHLNLLKNRTYCPTINVDKLWGLLPEEKKKEFSENKDIAPVIDVTRKGYFKVLGNGKLKHNQPIVVKARYFSSVAEKKIKAVGGQCILVA
Ribosomal protein L15 P 205 Plasmodium Falciparum 3D7 MGAYKYIQEIWKKKQSDAMHFLLRVRTWEYRQLPVVHRVSKPSRPDKARRLGYKAIQGFVIYRVRVRRGDRKKRVKKGIVHGKPKHQGVHKQKSTRNLKSVAEGKVGKSICGNLRVLNSYWVGQDAVYKYYEVILVDPNHNAVRNNPKINWICNPVHKHRELRGLTSAGKKYRGLRVKGHLSAKSRPSIRANWKRRQLIKLRKCR
60S ribosomal protein L10, putative Q 219 Plasmodium Falciparum 3D7 MGRRPARCYRYCKNKPYPKSRYCRGVPDPKIRIYDMGRKKADVNEFSGVVHLVSYEYEQISSEALEAARISANKYMITNCGKDNFHLRVRIHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGVVARVDIGQVLLSIRTKENFVSKACEALRRAKYKFPGRQKVFVSNKWGFTPFSKDEYQQYKKKGRIISDGVSCKFIREKGPLDKIYKDINTVLES
60S ribosomal protein L5, putative R 294 Plasmodium Falciparum 3D7 MAYVKVVKNKAYFKRYQVKYRRRREGKTDYRARKALILQDKNKYNAQKLRFVVRKTNSQVICQIACAHIEGDKILAEAKSKELIRYGIPVGLKNYAAAYATGLLCARRFLKSLNLDTQFLGVEKVTGEIENNEDKEDEEGRKPIKAFLDVGITRTTTGNRVFAALKGACDGGLNIPHGNNRFPGSKNEFNPEQLRKNILGIHVAEYMKTLQEEDNDKYKTHFNDYLKNNIGADDIEQMYLNAHEKIRQNPEKESKDTKNVKKFVSKHEKPKKLNAKLRKKRVKEKLALYVEKLQ
60S ribosomal protein L18-2, putative S 187 Plasmodium Falciparum 3D7 MGIALKNVGRIKKHGRKHLVSKNPYLRLLVKLYNFLARRTNANFNKIIAKRLIMPKRYRPPLSLSKLQYHMANHPNDIAVVVGSITDDKRLFSLKQLKVCALRFTETARKRIEDAGGECLTFDQLALKYPTGKKCVLLRGPTKARTAEKHFGKAPGKPKSKARPYVRSKGRKFEKARGRRKSRAYKK
60S ribosomal protein L36 B 112 Plasmodium Falciparum 3D7 MGRKSTIKPATGIAVGFNSGHVVTKRNLKLHKKKKPFSKRKELIKDVVREITGFSPYEKRIIELIKIGTSASTKRSLKYAKKKLGTHKRGKAKREEIQKVVILQRRKAAEKH
60S ribosomal protein L19 T 182 Plasmodium Falciparum 3D7 MSLTLQKRLAASVLKCGKNKIWMDPNEISEISLANSRFSIRKLYKEGLILKKPQKVHSRARVRLYKLAKRKGRHMGIGKRKGTKNARTNQKTLWIKRQRVLRRLLKRLRDSKKVDRHLYHSFYLKCKGNQFKNKRTLIEAIQREKNETLKKKAIADQLEAKRLKAQVLRNKRKLKKDKEVVA
60S ribosomal protein L18a U 184 Plasmodium Falciparum 3D7 MVKKIDNSLNTNIHQYHIVGRAIPTAKDKNPNVYRMCIFAKNDTNAKSRFWYFMKKINKLKKSNGELLACEQIKERFPLRVKNYGVLLRYDSRTGTHNMYKEFRDTTKEGAIAQLYSEMAGRHRARASSINIIRISEISSSLVRRPHIKQLLKRRLRFPALHLPTLQKEYRKKFASKRPSTYRM
60S ribosomal protein L21 V 161 Plasmodium Falciparum 3D7 MGGKSRGKRSGTRYKFSKKFRKHGECTANKYLEKLNYGDYVDIVCDSTQQKGMPFNYYHGKTGKIFHITKRGVGVLVNKRVKHRIEQKKVCVRIEHVRKSRCNEDFLLRKIKNAELIKEAKLKNEHINIKRKTEGPKPAAMIKVPPSKIITIEPLPFYEEY
60S ribosomal protein L17, putative W 203 Plasmodium Falciparum 3D7 MVKYAKKIRNLGKCAKGAGVDLRVHFKNTYEAARAIRRMKLLEAKKYLNDVIEKKRCVPFRKYNGGVGRTNQAKEFNHTQGRWPAKSCKFLLNILDNVQANAESRNLDVSKLRLIHVMVNKARPGRRRTYKAHGRINPFMSSPCHIQIIAREINKPAKKSLLSNAEKQKKLPFKVTLKKLIKLNISNQNRLKNKSVKKQQTVQ
60S ribosomal protein L22, putative X 139 Plasmodium Falciparum 3D7 MVAKKDSTKVSKKLKKKVVKKTKIVKGLKKQKMNKSTKGIKYVLDCTKPVKDTILDISGLEQFFKDKIKVDKKTNNLKNKVVVTSDEYKIYITVHIPFSKRYIKYLAKKYIKMHQIRDFLRVIAKGKLAYEFKYFQLNN
60S ribosomal protein L23 Y 190 Plasmodium Falciparum 3D7 MTQVEKKKKNVKNVNKHKIIHKRVIKKGNRKYTNGNTKVKYRKQVVKKTINKNVSKKKLLKENVDKDEKKKKMKISIRFKKPKTLIYARNPKCPRIVKSCHSKTLDKYGLIKYPLTSEKAMKKIEEINTLVFMCDKRANKKNIKKSVKNLFGIECDKVNVLNTLNGDKKAYVRLSGEHDALEVANKIGIL
60S ribosomal protein L26, putative Z 126 Plasmodium Falciparum 3D7 MKFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN
60S ribosomal protein L24, putative 0 162 Plasmodium Falciparum 3D7 MSQIKTTVKTEACSFSEYRIYPGRGQKYIARDGKVYFYLSSKFASLALQKKKAAKLRWTQTWRRNNKKTKIETTQRRRYKKTIKVQKAVCGLTVEDIRNRKAYVQSIEAKNKAKFGTKEKEDKKKTKDDKKKNLVHFQQKKDFTKSKMLNMAKSKMHKMMKK
60S ribosomal protein L27 1 146 Plasmodium Falciparum 3D7 MGKLLKPGKVIIILNGRRAGKKAVIVNTYEGQTRERPYSYCLVAGIEKHPLKVNKSMTKKKIVKRSKVKAFIKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTGEVSKDISFLHKKLYF
60S ribosomal protein L28 2 127 Plasmodium Falciparum 3D7 MSNVSNALVWELTRKSNCFIKKNKAGKKGVFLCDPLNVNYKNTPSSSGLVKSNSTNVTLKDGKVVFSVKTSKESNVVNQHFKAKNMKNVEKLLQQHGSFEKAKNKEKLLKKYKRLSKLYETSHKKTN
Ribosomal protein L37 C 92 Plasmodium Falciparum 3D7 MGKAGKGTGSFGKRNGKTHFLCLRCGKRSYHLQKKKCASCGYPSAKKRRFNWSVKAKRRNTTGTGRCRYIKTLRRKLKNKFTEGSTPKPKQR
60S ribosomal protein L35, putative 3 124 Plasmodium Falciparum 3D7 MSNVKAYELRTLKKKELLDKLDELKKELSGLRISKALGNSAKNSKIHGVRKNVARVLTVYNQKRKMELRQLYKNKKFKPYNLRKKLTKNKRLQLSPKQKAAMTLRQKKKVQNFPQRKYLVVHKE
60S ribosomal protein L29, putative 4 67 Plasmodium Falciparum 3D7 MAKSKNHTNHNQNRKAHKNGIKKPKKHKFMSRKGLDPNFFRNQKYCLKGIQKKKKELKLKAKQEKNN
60S ribosomal protein L7, putative 5 257 Plasmodium Falciparum 3D7 MADRYENQVENELGKSMTSLRAKKVNKNKELKQAAAKKIKTLKLINKKKRNDLRQRTLRYEEEYESERKKIIELKREARKNNCFYREAEKKVVFVIRLKGVNKLPPKVRSVFRLLRLLQVHNGVFVKVNKATKEMLKIVEPYVTYGYPTLSTVRKLLYKRGYVRVGKVRRYARKKIQDNADISKHLGKYNVHGIEDMVYQLYTCGPVFKKVNNFLWAFKLKPPRKGFKAKRHAFNEPRPGDWGNREAHINELINRMI
60S ribosomal protein L30e, putative 6 108 Plasmodium Falciparum 3D7 MAKKSKKSAGDNINAKLQLVMKSGKYQFGRKSCLKALRTGKGKLVIVSSNCPSIQRSVIEYYAMLSKCGVHDYHGDNNDLGTACGKLFRISCLVITDVGDSDIIKTNE
60S ribosomal protein L31 7 120 Plasmodium Falciparum 3D7 MVKGTVKKQKKTLKPVTKFITINLSKLTHKVCYKRKAPRAIKEIRSIAGKLMHTKDVRLDVKLNKFIWSKGVRNPPKRVRVKLERKRNEDEDSKEKMYTIVEHVMVDSYKGLVNECEANE
60S ribosomal protein L32 8 131 Plasmodium Falciparum 3D7 MAVKKVGKIIKKRTKKFTRFQSNRFMRVKPAWRKPRGIDCRVRRRYKGTNLMPSIGYGSNKKTKFLLPNNKYKYVVKNVKEMEPLIMNHTKYCVQIAHNVSSKKRKQIIERAKQMNVSVINAKARLQKTEE
60S ribosomal protein L35Ae, putative 9 140 Plasmodium Falciparum 3D7 MENVKVKKEQTEVSQKKKVVKKVLKKNKKTSNKKLQAVRLYEKGVILGYKRSQRNQDPNFTLISIKNVNTKKHAQFYVGKRVAYVYRTTKHHDGVKIKCIWGKVCRTHGNSGVIRAKFKTHIPPKAFGDRVRILMYPSNI
60S ribosomal protein L38 D 87 Plasmodium Falciparum 3D7 MPKQITDIRKFLKISRKPDTTAVIIMKKKSKTKKNTVITKLKLRTKKYLYTMVFADRKKAERIENSLLPSLKRIYYPQKKVGKTVKK
60S ribosomal protein L3 E 386 Plasmodium Falciparum 3D7 MSHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREVDKPGSKLHKKEIVEACTIIECAPMVVVGIVGYRETPKGLRILSTVWANHVSDEFRRRYYKNWYKSEKKAFTKSLNVPEATKNCLLKRIEKYCTVLRAICHTQPSKTPLRMKKAHIMEVQINGGSMKEKLEFVKEMLEKNLPVSTVFNPNEMIDVISVTKGHGTKGVVSRYGVKRLPRKTHRGLRKVACIGAWHPARVQFQIPRHGQKGYFHRTERNKKIYRIGLKTDKNSASTDADITEKKITPMGGFPHYGVVNEDFLLLKGCVAGTKKRPITLRKNIVPQVSRDALAQVSLKFIDTSSKIGHGRFQTSEEKVKYYGPLKKDLKA
60S ribosomal protein L4 F 411 Plasmodium Falciparum 3D7 MATIRPVANVYSTNGKNVVGEVEIPVVFQTPIRNDLIQSVYTNMSKNRRHPYAVKLGAGYETSAESWGTGRAVARIPRVPGGGTHRAGQGAFGNMCRGGGMFNPTKIWRRWGRKVNLKEKRYAVCSSIAASGVTSLVLARGHRISHLKEVPLVVSNDIESLSKTKEAVNFLVSLGLKDEVNRLVKSKKIRAGKGKMRNRKYKIRNGPLIIYENDNGVKKAFRNIPGVDLCKVTKLNLLKLAPGGSIGRLCIWSESAFKKLDVIYGKIHEKKVTKKNYILPKSIVHNPDIYRIIHSDKVQASLLAKKKPCKKRLQNKNSLTNFAVRCRLNPAYKLLRSLAVLRMRKSILEKSKNKKEKRVQKQIQKKELQKINHDYYKGVAKAVKKKKKREEKKAKSKKTANQAVINVAAEE
60S ribosomal protein L11a, putative G 173 Plasmodium Falciparum 3D7 MENKEQNVMREIKVNKLVLNICVGESGDRLTRAARVLEQLTEQKPIFGKCRFTIRSFGVRRNEKISCFVTVRGKKALEILEKGLKVKEYELRRKNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVHLSRSGYRVTRRTRRRSKISKTHKVTKEDAMKWFQTKFDGILLK
60S ribosomal protein L6, putative H 190 Plasmodium Falciparum 3D7 MKTIVSTQKVLIPEGVKVAINARKVTVSGKYGTLRRSFRHLPIDIRLNKLKKYIKVVMWFGVPDSLACIRTVCTHLKNMFTGVTKKFLYKMRLVHAHFPINSNIVDNNTRIEIRNYLGEKSVRFVKALPGVVIEKSPNVKDEIYVSGADIENVSLTAALIHQSVLCRNKDIRKFLDGIYVSEVTTVEKDE
60S ribosomal protein L6-2, putative I 221 Plasmodium Falciparum 3D7 MTNTSNELKHYNVKGKKKVLVPVNAKKTINKKYFGRKVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNKVFAHYLKSKFTLRNDMVLHKMKF
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-01-27
Deposition Author(s): Bai, X.-C. , Baum, J. , Brown, A. , Scheres, S. , Wong, W.