5TIS
Room temperature xfel structure of the native, doubly-illuminated photosystem ii complex
PDB DOI: 10.2210/pdb5tis/pdb
Classification: PHOTOSYNTHESIS Organism(s): Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1)
Deposited: 2016-10-03 Deposition Author(s): Adams, P.D. , Afonine, P.V. , Aller, P. , Alonso-Mori, R. , Andi, B. , Aquila, A. , Bean, M.A. , Bergmann, U. , Boutet, S. , Braeuer, P. , Brewster, A.S. , Brunger, A.T. , Chatterjee, R. , Cheah, M.H. , De Lichtenberg, C. , Dobbek, H. , Docker, P.T. , Douthit, L. , Evans, G. , Fransson, T. , Fuller, F. , Glownia, J.M. , Gul, S. , Hunter, M.S. , Hussein, R. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Koroidov, S. , Kroll, T. , Kubin, M. , Laksmono, H. , Lassalle, L. , Liang, M. , Liebschner, D. , Lyubimov, A.Y. , Messinger, J. , Michels-Clark, T. , Moriarty, N.W. , Nelson, S. , Nilsson, H. , Orville, A.M. , Pastor, E. , Pham, L.V. , Robinson, J. , Saracini, C. , Sauter, N.K. , Seuffert, I. , Shevela, D. , Sierra, R.G. , Sikorski, M. , Sokaras, D. , Stan, C.A. , Tran, R. , Uervirojnangkoorn, M. , Watermann, D.G. , Weis, W.I. , Weng, T.-C. , Weninger, C. , Wernet, P. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zhang, M. , Zhu, D. , Zouni, A. , Zwart, P.H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.25 Å
Room temperature xfel structure of the native, doubly-illuminated photosystem ii complex
Adams, P.D. , Afonine, P.V. , Aller, P. , Alonso-Mori, R. , Andi, B. , Aquila, A. , Bean, M.A. , Bergmann, U. , Boutet, S. , Braeuer, P. , Brewster, A.S. , Brunger, A.T. , Chatterjee, R. , Cheah, M.H. , De Lichtenberg, C. , Dobbek, H. , Docker, P.T. , Douthit, L. , Evans, G. , Fransson, T. , Fuller, F. , Glownia, J.M. , Gul, S. , Hunter, M.S. , Hussein, R. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Koroidov, S. , Kroll, T. , Kubin, M. , Laksmono, H. , Lassalle, L. , Liang, M. , Liebschner, D. , Lyubimov, A.Y. , Messinger, J. , Michels-Clark, T. , Moriarty, N.W. , Nelson, S. , Nilsson, H. , Orville, A.M. , Pastor, E. , Pham, L.V. , Robinson, J. , Saracini, C. , Sauter, N.K. , Seuffert, I. , Shevela, D. , Sierra, R.G. , Sikorski, M. , Sokaras, D. , Stan, C.A. , Tran, R. , Uervirojnangkoorn, M. , Watermann, D.G. , Weis, W.I. , Weng, T.-C. , Weninger, C. , Wernet, P. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zhang, M. , Zhu, D. , Zouni, A. , Zwart, P.H.
Primary Citation of Related Structures: 5TIS
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 1 | A | 344 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 46 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MIDALVLVAKLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 36 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQKSS |
| Photosystem II manganese-stabilizing polypeptide | O | 272 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MKYRILMATLLAVCLGIFSLSAPAFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein T | T | 32 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | METITYVFIFACIIALFFFAIFFREPPRITKK |
| Photosystem II 12 kDa extrinsic protein | U | 134 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MQRLGRWLALAYFVGVSLLGWINWSAPTLAATASTEEELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 163 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MLKKCVWLAVALCLCLWQFTMGTALAAELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein Ycf12 | Y | 46 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MGIFNGIIEFLSNINFEVIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Photosystem II reaction center X protein | X | 41 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP47 reaction center protein | B | 510 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRRKEAV |
| Photosystem II protein Y | R | 41 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MDWRVLVVLLPVLLAAGWAVRNILPYAVKQVQKLLQKAKAA |
| Photosystem II CP43 reaction center protein | C | 461 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MVTLSSNSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 352 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 84 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MAGTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 45 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MTSNTPNQEPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 66 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG |
| Photosystem II reaction center protein I | I | 38 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE |
| Photosystem II reaction center protein J | J | 40 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MMSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-10-03 Deposition Author(s): Adams, P.D. , Afonine, P.V. , Aller, P. , Alonso-Mori, R. , Andi, B. , Aquila, A. , Bean, M.A. , Bergmann, U. , Boutet, S. , Braeuer, P. , Brewster, A.S. , Brunger, A.T. , Chatterjee, R. , Cheah, M.H. , De Lichtenberg, C. , Dobbek, H. , Docker, P.T. , Douthit, L. , Evans, G. , Fransson, T. , Fuller, F. , Glownia, J.M. , Gul, S. , Hunter, M.S. , Hussein, R. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Koroidov, S. , Kroll, T. , Kubin, M. , Laksmono, H. , Lassalle, L. , Liang, M. , Liebschner, D. , Lyubimov, A.Y. , Messinger, J. , Michels-Clark, T. , Moriarty, N.W. , Nelson, S. , Nilsson, H. , Orville, A.M. , Pastor, E. , Pham, L.V. , Robinson, J. , Saracini, C. , Sauter, N.K. , Seuffert, I. , Shevela, D. , Sierra, R.G. , Sikorski, M. , Sokaras, D. , Stan, C.A. , Tran, R. , Uervirojnangkoorn, M. , Watermann, D.G. , Weis, W.I. , Weng, T.-C. , Weninger, C. , Wernet, P. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zhang, M. , Zhu, D. , Zouni, A. , Zwart, P.H.