5T5H
Structure and assembly model for the trypanosoma cruzi 60s ribosomal subunit
PDB DOI: 10.2210/pdb5t5h/pdb
Classification: RIBOSOME Organism(s): Trypanosoma Cruzi
Deposited: 2016-08-31 Deposition Author(s): Espina, N. , Frank, J. , Grassucci, R.A. , Gutierrez-Vargas, C. , Liu, Z. , Madison-Antenucci, S. , Ramesh, M. , Sun, M. , Tong, L. , Tutuncuoglu, B. , Wei, J. , Woolford Jr., J.L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.54 Å
Structure and assembly model for the trypanosoma cruzi 60s ribosomal subunit
Espina, N. , Frank, J. , Grassucci, R.A. , Gutierrez-Vargas, C. , Liu, Z. , Madison-Antenucci, S. , Ramesh, M. , Sun, M. , Tong, L. , Tutuncuoglu, B. , Wei, J. , Woolford Jr., J.L.
Primary Citation of Related Structures: 5T5H
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ribosomal protein L27 | A | 132 | Trypanosoma Cruzi | KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKSKERPYGHSLIAGMKKYPKKVVRGMSKRTIQRRSRVGVFLRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNRWFFQRLRF |
| Ribosomal protein L35A | L | 136 | Trypanosoma Cruzi | NRSKKIQQLTKKTSTVKRNRKSPRLYMKAVLAGYTRGLHGQNKNTAIVRIENVNTKEDAAWYVGKRVCYVYHGYKMKRCVRWSKAPARRSNTRAIWGRVTRPHGGSGAVRAKFNGSAVPASAIGKRVRVYLYPSRI |
| Ribosomal protein L37 | N | 81 | Trypanosoma Cruzi | TKGTTSMGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRMRYLKEVNRRIKNHFKTSL |
| 60S ribosomal protein L37a | O | 85 | Trypanosoma Cruzi | KRTVKMGVMGRYGARYGANPRKRAKKLEVSQHARHFCSFCGKFAFRRKAVGIWRCDGCSKTMAGGAYTLSTPNNSTVRSTVRRLR |
| Ribosomal protein L38 | P | 58 | Trypanosoma Cruzi | PREIKNLKEFLAICSRKDARCVKVKHNPAQTKFKVRCSRYLYTLVVADKKKADKIERS |
| Ribosomal protein L39 | Q | 50 | Trypanosoma Cruzi | GRFKPLAIKKKYAKKLKQNRPVPYWIRLRTGNRIKWNEKRRHWRRTKLHY |
| 60S ribosomal protein L4 | R | 337 | Trypanosoma Cruzi | SVSVYSASEDKVVGTCPLPAVFTAPIRHDIVQFVHTNMAKNSRQAYAVNRLSGMNHSAESWGTGRAVARIPRIGGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSVPALVMSRGHKIENVAEVPLVVEDAVQGYEKTKEAMAFLKAIGAVDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNALNLLHLAPGGHVGRFVVWTKGAFEKLDSIFGTFTKASAVKKGFMLPAPMLTNTDVTRIMQSEEVRRVLKPKKLQPKKASRLTQPTNGFRNRRLRLRLNPFQKKESAMVKG |
| 60S ribosomal protein L18a | S | 177 | Trypanosoma Cruzi | VKPHLRHYCVVGRETPSEKNPAPTVYKFEVFAPNFVVAKSRFWRMMREKNKVKSTHGDVLSCKVVKDRKLAARNYSVDIAYYSQRCGYTHMVKEFRDVSKAGAVSQAYHDLASRHRARYHNIEVLGVKSIPNHQVKRLSISEYHASNLSFPLLHRRVKAPRKDRVVFVKKNTKRAVV |
| 60S ribosomal protein L44 | T | 93 | Trypanosoma Cruzi | VNYPKKKTMYCPDARCKAHKSFKVVQYKAGKARLYARGKRRYDRKQSGYGGQTKPIFHKKAKTTKKIVLKLQCSNCKSIIQNVLKRTKHFELN |
| 60S ribosomal protein L5 | U | 254 | Trypanosoma Cruzi | VVKNKAYFKRFQVKYRRRREGKTDYQARRQMVLQDKTKFGTPKYRLVVRITNRDIIAQVVQAKVVGDEVVMAAYSHELPQFGIQHGLTNYAAAYATGLLVARRMLTKLGLANKFEGTKEADGSYSAVRTKADDQGDDEKRFPFKAILDVGLARTTTGARVFGVMKGAVDGGLAVPHRPNRFPGYDKEKDSLNAKAHRDRILGLHVAEYLKQVREEASSNPEESTCQFSKYIKDKVVPNELEGMYKKAHAAIRAD |
| 60S ribosomal protein L6 | V | 171 | Trypanosoma Cruzi | EYTTLRKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLVISGPMKYNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKTAKAAPKGIVSDARAQLQKKVDAALIEAIRKDPLGKEKAGYLHSVFTIKPGDAPHRMRW |
| 60S ribosomal protein L27A/L29 | B | 144 | Trypanosoma Cruzi | PTRFKKTRHQRGSTFCGYGRVGKHRKHPSGRGNAGGQHHHRINFDKYHPGYFGKCGMNHYHLKKNPLWKPTINLNNLAKLIAKDEALKAKKGETLPVVDLLANGYSKLLGNGHLQTPCIVKARWVSKLADKKIRKAGGAVVLQA |
| 60S ribosomal protein L7 | W | 215 | Trypanosoma Cruzi | KAIAANKAARVALKKAAYARGLRYSREYRSAEKKLVHLRRQAKSCGNYYLEAKPKVAVVTRIRGIAKVAPKQRKILQLLRLRQIFNTVFVRLNKPMENMLRAVEPYIAYGYPSLRTVRMMVYKRGHLKINGQRVKIVNNQMIESKYNNENIVCAEDIVNQIYTGGKHFREVTNGLWPFKLSPPAGGMRQKRRHFVEGGDYGNRDALINRFLARMI |
| Ribosomal protein L7a-like protein | X | 223 | Trypanosoma Cruzi | RPKNFGIGHDVPYARDLSRFMRWPTFVTMQRKKRVLQRRLKVPPALHQFTKVLDRSSRNELLKLVKKYPSETRRARRQRLFDVATEKKKNPEAASKKAPLSVVTGLQEVTRTIEKKTARLVMIANNVDPIELVLWMPTLCRANKVPYAIVKDKARLGDAVGRKTATCVAITDVNAEDEAALKNLIRSVNARFLARSDVIRRQWGGLQLSLRSRAELRKKRARN |
| Ribosomal protein L24 | Y | 61 | Trypanosoma Cruzi | TIDCEFSHFAVHPGHGRRYVPFAFLSTKPVLTFARPKCFAMYMRKKNPRFVPWTRTYRRIN |
| 60S ribosomal protein L26 | Z | 113 | Trypanosoma Cruzi | GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRKAILERK |
| 60S ribosomal protein L18 | I | 192 | Trypanosoma Cruzi | GVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFGAAGVPGSHAKPFTSNRGKERQRSSARRRAFRHK |
| 60S ribosomal protein L34 | J | 104 | Trypanosoma Cruzi | PRVQYRRRMHYATRGNRMKLVRTPGNRLVMQKRVKRSQGPHTPWVLGHKRLAGTKALRHTEARLASRHEKSTSRPYGGVLSHEQVRDRIVRAFLIEEQRIVKRA |
| 60S ribosomal protein L35 | K | 120 | Trypanosoma Cruzi | IRDLRDKSKDELLKQLMEFKKELSQLRVAQQLNSAGTRLGRIRLIRKSIARILTVLNRNQRESLRKVYAGRRLRLAMPKALRPKLTRRRRLALKDNEKNRKTRRQLRMARKFPRRVYAVK |
| Ribosomal protein L36 | M | 95 | Trypanosoma Cruzi | PAPRTGIIAGFNKGHKTTRRARAPSSNDRYALPHKKLRAVKAIITDLVGLSPMERRVQELLRVGKDKRALKFCKKRLGNFKAAKKRRAKMEEALR |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5.8S rRNA | c | 169 | NA | AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUCAAUUACCGAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCCCCGGAGUCAUCCCCGUGCAUGCCAUAUUUCUCAGUGUCG |
| 5S rRNA | d | 118 | NA | GGGUACGACCAUACUUGGCCGAGUGCACCACAUCCCGUCCGAUUUGUGAAGUUAAGCGGCCACAGGCCUCGUUAGUACGGCGAUCAGUGAUGGCGCUGGAACCCGGGGUGCUGCAAUC |
| srRNA1 | e | 146 | NA | GUGGAAAUGCGGCCAGGUGACCAAUCAAUCCUCCCACGGUGAGCUUUCUUUUCACCAUAAUCCACUUGGGCCUUUCGAGUUGUUCGGAACGGGGGCUCAAGAUUGAAAAAUGCAGUUGUGAGUUCUAUUAAAGCAAAAACCUGGGG |
| srRNA3 | f | 46 | NA | CGAAUCGCCACUUCUCUCGGCGCCAAGUACCUUCAUAUUCACAAGA |
| srRNA2 | g | 123 | NA | GGUAUCGUGAGGGUAGUACGAGGUGUACUCCCAUGCCGUGCCUCUGGUUUCUGGAGUUUGUCGAACGGCAAGUGCUCCGACGCUAUCGCACGGUGGUUAGCCAGUCCCAAGACCAGAUGCCCA |
| srRNA4 | h | 91 | NA | CACGUCCCUCUCCAAACGAGAGAACAUGCAUGGGCUGGCAUGAGCGCGUGGGGCCCCGAGGCGCUGAACCUUGAGGCCUCAUGCUGGGACU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-08-31 Deposition Author(s): Espina, N. , Frank, J. , Grassucci, R.A. , Gutierrez-Vargas, C. , Liu, Z. , Madison-Antenucci, S. , Ramesh, M. , Sun, M. , Tong, L. , Tutuncuoglu, B. , Wei, J. , Woolford Jr., J.L.