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5T16

Crystal structure of yeast rnase iii (rnt1p) complexed with a non-hydrolyzable rna substrate analog

PDB DOI: 10.2210/pdb5t16/pdb

Classification: hydrolase/rna
Organism(s): Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct

Deposited: 2016-08-18
Deposition Author(s): Ji, X. , Song, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.783 Å

Literature

Crystal structure of yeast rnase iii (rnt1p) complexed with a non-hydrolyzable rna substrate analog

Ji, X. , Song, H.

Primary Citation of Related Structures: 5T16


Proteins
Molecule Chains Sequence Length Organism Sequence
Ribonuclease 3 A 276 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct YDPTKAGDIVKATKWPPKLPEIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYIGGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYAKQRAAIPRSESVLKDPS
Ribonuclease 3 B 276 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct YDPTKAGDIVKATKWPPKLPEIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYIGGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYAKQRAAIPRSESVLKDPS
Ribonuclease 3 I 276 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct YDPTKAGDIVKATKWPPKLPEIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYIGGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYAKQRAAIPRSESVLKDPS
Ribonuclease 3 J 276 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct YDPTKAGDIVKATKWPPKLPEIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYIGGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYAKQRAAIPRSESVLKDPS
Ribonuclease 3 C 119 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct ISNYKYLEVIQLEHAVTKLVESYNKIIELSPNLVAYNEAVNNQDRVPVQILPSLSRYQLKLAAELKTLHDLKKDAILTEITDYENEFDTEQKQPILQEISKADMEKLEKLEQVKREKRE
Ribonuclease 3 D 119 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct ISNYKYLEVIQLEHAVTKLVESYNKIIELSPNLVAYNEAVNNQDRVPVQILPSLSRYQLKLAAELKTLHDLKKDAILTEITDYENEFDTEQKQPILQEISKADMEKLEKLEQVKREKRE
Ribonuclease 3 E 119 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct ISNYKYLEVIQLEHAVTKLVESYNKIIELSPNLVAYNEAVNNQDRVPVQILPSLSRYQLKLAAELKTLHDLKKDAILTEITDYENEFDTEQKQPILQEISKADMEKLEKLEQVKREKRE
Ribonuclease 3 F 119 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct ISNYKYLEVIQLEHAVTKLVESYNKIIELSPNLVAYNEAVNNQDRVPVQILPSLSRYQLKLAAELKTLHDLKKDAILTEITDYENEFDTEQKQPILQEISKADMEKLEKLEQVKREKRE
Ribonuclease 3 K 119 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct ISNYKYLEVIQLEHAVTKLVESYNKIIELSPNLVAYNEAVNNQDRVPVQILPSLSRYQLKLAAELKTLHDLKKDAILTEITDYENEFDTEQKQPILQEISKADMEKLEKLEQVKREKRE
Ribonuclease 3 L 119 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct ISNYKYLEVIQLEHAVTKLVESYNKIIELSPNLVAYNEAVNNQDRVPVQILPSLSRYQLKLAAELKTLHDLKKDAILTEITDYENEFDTEQKQPILQEISKADMEKLEKLEQVKREKRE
Ribonuclease 3 M 119 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct ISNYKYLEVIQLEHAVTKLVESYNKIIELSPNLVAYNEAVNNQDRVPVQILPSLSRYQLKLAAELKTLHDLKKDAILTEITDYENEFDTEQKQPILQEISKADMEKLEKLEQVKREKRE
Ribonuclease 3 N 119 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct ISNYKYLEVIQLEHAVTKLVESYNKIIELSPNLVAYNEAVNNQDRVPVQILPSLSRYQLKLAAELKTLHDLKKDAILTEITDYENEFDTEQKQPILQEISKADMEKLEKLEQVKREKRE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA substrate analog g 34 NA GCXAUGUCAUGUCAUGAGUCCAUGGCAUGGCAUG
RNA substrate analog h 34 NA GCXAUGUCAUGUCAUGAGUCCAUGGCAUGGCAUG
RNA substrate analog o 34 NA GCXAUGUCAUGUCAUGAGUCCAUGGCAUGGCAUG
RNA substrate analog p 34 NA GCXAUGUCAUGUCAUGAGUCCAUGGCAUGGCAUG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-08-18
Deposition Author(s): Ji, X. , Song, H.