5OPT
Structure of ksrp in context of trypanosoma cruzi 40s
PDB DOI: 10.2210/pdb5opt/pdb
Classification: RIBOSOME Organism(s): Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990)
Deposited: 2017-08-10 Deposition Author(s): Bochler, A. , Brito Querido, J. , Chicher, J. , Hashem, Y. , Mancera-Martinez, E. , Simonetti, A. , Vicens, Q.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.0 Å
Structure of ksrp in context of trypanosoma cruzi 40s
Bochler, A. , Brito Querido, J. , Chicher, J. , Hashem, Y. , Mancera-Martinez, E. , Simonetti, A. , Vicens, Q.
Primary Citation of Related Structures: 5OPT
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 40S ribosomal protein S6 | P | 250 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MKLNIAYPRNGTVKQFEITEEVLRRVSLTDYRLGNEVDGAIFGDAFRGYTFKLQGGSDKQGFPMVQGVMAPSRVSLLVKRGAVGFNTFRGYQGERRRKSLRGCILASDIAVLNVVIVKTGEQPIEGVTDVSVPRRLGPKRANKIRKLFNLSRGDDVRKYVIRRKVVKEGKKDRFKAPKIQRLITTAVKARRAKKAKVAIEKVRKSAEERRAYLHLIGTRRRAARQRNSARRHAHKVAAQKQALALFKGKK |
| 40S ribosomal protein S16, putative | R | 149 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MTAEKSHTHKQVQTFGKKKTAIAVATVTKAAQCNIRVNGVPVSQILPETLRAKIMEAVNVVGSRHFARLRIDVTVRGAGQVAQAYATRQAIAKGLVAYYQKYKNEVEKAALKDKYLAYDKYLLIADPRRCEPKKWGRHSARTRFTKSYR |
| 40S ribosomal protein S27, putative | S | 86 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MGFFDSDLSYPTVRSERMKHKRRRLVQGPNSYFMDVKCPGCNAITIVYSHATSEVQCNGCATKLCRPTGGKAMLTTGCGFRKKADH |
| 40S ribosomal protein S15, putative | T | 152 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MTSNITQERYEQLKKERTFHKFTYRGLEIDPLLALSEEEFKTLVHARARRHMNRHANRRAPVLLKRLREAKKDVKAGEKPRAVKTHLRDVVITPEMVGSVVGIYNGRQFNAVEIKGEMIGHYLGEFSMTYKPVIHGRPGVGATHSSRFIPLK |
| 40S ribosomal protein S18, putative | U | 153 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MSLTLQSEQFQHIVRLLNTNVEGKRKVPFALRMVKGVGIRFAYMVCKKAGIDVERRAGTLTAEELERISEVIADPAKFKIPDWFLNRQRDPKTGKTEHLTSAMVDTRLREDLERLRKNRVHRGVRHAYGLRVRGQHTCTSGRHGKTVGVSRTK |
| 40S ribosomal protein S14, putative | V | 144 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MSKKQEVKFYGSSAAKDELVYGVVHIYASFNDTFVHVTDMSGRETFCKITGGMKVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRATGGVGTRSPGPGAQAALRALARAGMKIGRIEDVTPIPTDSTRRKGSRRGRRL |
| 40S ribosomal protein S3a-2 | W | 261 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MTLGKNKRISKGGKRGKKKAQETMSRKEWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVEAKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEATA |
| 40S ribosomal protein S11, putative | X | 173 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MTAPEQYARVHSVDLTLQHEKAYQRQTAVNENSHNPNKKHVNMSGHIRYSKKIGLGFKTPKSAINGKYIDRKCPFTSDVSIRGRILRGVVHSTKMKRSIVIRRDYLHFIRKYQRYQKRHRSLTVHCSPCFDPKPGDEVIVGQCRPLSKTIRYNVLEVVSKSAPGKLGRKFSKN |
| 40S ribosomal protein S24 | Y | 137 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MVFQKKKAEVTVRTSQFKVNKLLNRKQFIVEVNHPGWCGTVPAKLIRSRLASLYKVADENQISVFGFKTKFGGGKTTGFGLIYDDLAALKRIEPNYRKARLGMGKKKQPARKSVKERRNRNKKIRGKAKGKMQTKKK |
| 40S ribosomal protein S8 | Z | 221 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPAHTKLGARRVSPVRARGGNFKLRGLRLDTGNFAWSTEAIAQRARILDVVYNATSNELVRTKTLVKNCIVVVDAAPFKLWYAKHYGIDLDAAKSKKTLQSTTEKKKSKKTSHAMTEKYDVKKASDELKRKWMLRRENHKIEKAVADQLKEGRLLARITSRPGQTARADGALLEGAELQFYLKKLEKKKR |
| 40S ribosomal protein S9, putative | B | 190 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MRNYNNFNRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRQLEGSAIMRRCHDYGFLEEEKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHARVLILQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKRVKRKAAKKGAAGGDDDE |
| Ribosomal protein S7, putative | Q | 211 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MAATRKGGRMSVKPHLRKLRKLKRPNPSEDEDSVAKALFELEATHKTLRTQLPRFHINTVRTLSSPRFRRTATVVFYPLRFLMLVRKIQRTLTAELEKRFPGSIVVLVAQRKITKRPKDVYKLQKVQRSRTSVAVFENILNDLIYPCDVMGRRWRCRTDGTKVMKVFLDSRDRKRVESRLPIIAHVYKQLTHRTVSFGFMWNPKLQQVSSR |
| 40S ribosomal protein SA | F | 245 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MTSVESGAKVLRMKEGDVQKLVAMHCHLGTKNRSNAMKKYIHSRTKEGTNIIDLHMTWEKLILAARVIAAVENPQDVTVCSTRLFGQRAIFKFSQLVGTSFLAGRFIPGTFTNQIQKKFMQPRVLLVTDPRTDHQALREASLVNIPVIAFCDTDAPLEFVDIAIPCNNRGRYSISMMYWLLAREVLRLRGTIPRSVPWDVKVDLFFYRDPEEALKHEEVNQAAAPVAEADEGFGWVERDNNAWEQ |
| 40S ribosomal protein S2, putative | D | 263 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MADAQRAPSGEQRGFGRGRGGRGGRGGRGGRGGSNEKEEWVPCTKLGRLVKEQKITSLEEIFLFSMPIKEHQIVDQLIKESDMRDELMLIVPVQKATSAGQRTRFKAFNIVGDGNGHIGVGARVGKEVSLAIRASMIAAKLNVVPIRRGYWGNKIGEPHTIPMKVTGKCGSVSVRLIPAPRGAGIVAAPVPKKILEFAGVEDVYTSSCGNTRTRGNFIMATFYALRKTYGFLTPDLWAETEVSRDPTDEHSDFLTMGSKMIAA |
| 40S ribosomal protein S21, putative | G | 236 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MTTIGTYNEEGVNVDLYIPRKCHATNNLITSYDHSAVQIAIANVDANGVLNGTTTTFCIAGYLRRQAESDHAINHLAISKGIIRIKTGKKPRAKKLKNVKGLGVRGLPRGALQQRGARVLPTQRGVAQRGGAQKGNVRKLQPQPQKQRSQLNQRSQQQHGARPTRKEEGGRTQRGGRDAPQARKQQGRNEPQARKQQGRDAPQARKQQGRDAPQARKQQGRDAPQARNKKSGPNRK |
| Ribosomal protein S25, putative | A | 110 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MPPKKNAKPTKPAPKKGKMENMNKGAKKAAKKWSKGRTREALQNAVVFDKETMDKLLSEVPKYKVITPSIISDRLKISVALAAKGLQHLCRQKLIKLVSCSSKFRLYSRV |
| 40S ribosomal protein S12 | I | 141 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MAEETPVLEVSPAVVDAVMDATPENLEDALRIVLQKSREVNGLIRGLSEVARALDRRTAHLCVLAEDCEDEEYKKLITALAKQGEVDLINVEEREKLAQWAGLTKMDSTGELKKTFKCSCVAVRDFGERTRALEFLLSHLR |
| Ubiquitin/ribosomal protein S27a, putative | J | 150 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MQIFVKSAAGKTSAIQASAQETVASLKSKAGVCDGTLFYGGHCLCDEATLADYGLQRESTIQVMLPVEGGKGKKKKKKVFTKPKKPIHRHKLEKMRALKYFKVTENDDGSFKVERTRDECPNPVCGAGVFMAQHKDRKYCGKCHLTYAAK |
| 40S ribosomal protein S17, putative | K | 196 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MCMQHHTCALFFASCTAFICFHWLGCTFGCRSFLFFFTFGFFSKREERVQSNTASMGKIRTKTVKRASKQLVEKYFSKLNKDFYQNKRVVMDVTIARSKKLKNKIAGYTTHIMKRLARGPVRGISLKLQEEERERRMDYVPEVSHVDQAIQDGVHVDKQTFSMLKRMETGVPRHVALTTVVAPVTKKGGRRAPARK |
| 40S ribosomal protein S4 | L | 273 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MTKKHLKRLYAPKDWMLSKLTGVFAPRPRAGPHKLRECMTLMIIIRNRLKYALNAAEAQMILRQGLVCVDGKPRKDTKYPVGFMDVVEIPRTGDRFRILYDVKGRFALVKVGEAEGNIKLLKVENVYTSTGRIPVAMTHDGHRIRYPDPRTHRGDTLVYNLKEKKVVDLIKSSNGKVVMVTGGANRGRIGEIMSIERHPGAFDIARLKDAAGHEFATRASNIFVIGKDMQSVPVTLPKQQGLRINVIQEREEKLIAAEARKNMQTRGVRKARK |
| 40S ribosomal protein S23, putative | M | 143 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MTKANGQHAARKLVRLRRKNRWADKGWKKSHTFVAQKANPFGGSSHAKGIVLEKIGVGAKQPNSAIRKCVRVQLIKNDKKIIAFVPNDGCLHFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVSNVGLYALYRQKKEKPRN |
| 40S ribosomal protein S10, putative | N | 161 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MATYVPKRSRDDVYRFFFTEGVISCKKDPLGTWTGSLGGKTFTVPSIQVMQLMRSMKSRGLIKEQFAWRHFYWFLNDEGVEYLRKYLFLPHDAVPNTHKAEYKVLEREGGRGRGRGEGRGRGRGEGRGRGRGEGRGRGRGFHSERDAYRTGAAAAPAVEAQ |
| 40S ribosomal protein S5, putative | O | 190 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MSAKAPKLFNKWSYENLQTTEIALSDHISKTATYVPHSAGRWQKKRFRKARIPIVERLTNGLMFKGRGNGKKLQAVRLVKHTLEIIHLLTDQNPLQVVIDAVSKGAPREDSTRVGSGGVVRRQAVDVSPMRRVNEAIYLMCKGAREAAFRNLKTLPECLADEIVNASKGSSNSYAIKKKDEVERVAKANR |
| 40S ribosomal protein S30 | C | 66 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MGKVHGSLARAGKVKNQTPKVAKQEKKKQPRGRAFKRLKYTQRYLAKTLKPGEKLHMNKQPPGKAG |
| RNA-binding protein, putative | H | 257 | Anas Platyrhynchos , Influenza B Virus (Strain B/Panama/45/1990) | MPAKSANKPASKPASKPAAKPAAKPAAKAPAPKAEKKGAAKAPAPKAAAPAPKAAAAAPKPAVRDAKQRSDAANHNGLYVKNWGQGSVDDARALFGTAGKVVGVRVRRRRYAIIFFENAAAVKKAIDLFNGKEFMGNVLSVVPAKTTPKPDPHANSSVVFVSPIFRASTTKKQILELFSGMKVLRLRTYRNNYAYVYLDTPAAAQRAVKEKNGAEFRGKQLRVALSTRSLAKDRARAERARLLMAAQKFNKRKNHTK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 18S rRNA | e | 2319 | NA | UGAUCUGGUUGAUUCUGCCAGUAGUCAUAUGCUUGUUUCAAGGACUUAGCCAUGCAUGCCUCAGAAUCACUGCAUUGCAGGAAUCUGCGCAUGGCUCAUUACAUCAGACGUAAUCUGCCGCAAAAAUCUUGCGGUCUCCGCAACAUUGGAUAACUUGGCGAAACGCCAAGCUAAUACAUGAACCAACCGGAUGUUCUCUGUUCCGGCGGCAGGGCAACCUGCUGCCAUGGGACGUCCAGCGAAUGAAUGAAAGUAAAACCAAUGCCUUCACCGGCAGUAACACUCAGAAGUGUUGAUUCAAUUCAUUCCGUGCGAAAGCCGGGUUUUUUUAUCCGGCGUCUUUUGACGAACAACUGCCCUAUCAGCCAGCGAUGGCCGUGUAGUGGACUGCCAUGGCGUUGACGGGAGCGGGGGAUUAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAAUAGCUACCACUUCUACGGAGGGCAGCAGGCGCGCAAAUUGCCCAAUGUCAAAAAAAAAAGAUGAGGCAGCGAAAAGAAAUAGAGCCGACAGUGCUUUUGCAUUGUCGUUUUCAAUGGGGGAUAUUUAAACCCAUCCAAAAUCGAGUAACAAUUGGAGGACAAGUCUGGUGCCAGCACCCGCGGUAAUUCCAGCUCCAAAAGCGUAUAUUAAUGCUGUUGCUGUUAAAGGGUUCGUAGUUGAAUUGAGGGCCUCUAAGGCGCAAUGGUUUAGUCCCAUCCACUUCGGAUUGGUGACCCAUGCCCUUGUGGUCCGUGAACAGACAUUCAGAAACAAAAAACACGGGAGUGGUACCUUUCCUGAUUAUCGCAUGUCAUGCAUGCCAGAGGGCGCCCGUGAUUUUUUACUGUGACUAAAAAAGUGUGACCAAAGCAGUCAUUCGACUUGAAUUAGAAAGCAUGGGAUAACAAAGGAGCAGCCUCUGGGCCACCGUUUCGGCUUUUGUUGGUUUUAAAAGUCCAUUGGAGAUUAUGGGGCAGUGUGACAAGCGGCUGGGUGGUUAUUCCACACACACACACACACGCUCCUUUUUUUUGGACGUGUUUUGUGUGUGUAUGUGGCACUCGUCGCCUUUGUGGGAAAUCCGUGUGGCACUGUGUUUGAUGUUGUUGGCAGAGACUUCGGUCUUUUGCCUUCGCAUAUUUCACACAUGUGUCAUGCCUUCCCUCAACUCACGGCAUCCAGGAAUGAAGGAGGGUAGUUCGGGGGAGAACGUACUGGUGCGUCAGAGGUGAAAUUCUUAGACCGCACCAAGACGAACUACAGCGAAGGCAUUCUUCAAGGAUACCUUCCUCAAUCAAGAACCAAAGUGUGGGGAUCGAAGAUGAUUAGAGACCAUUGUAGUCCACACUGCAAACGAUGACACCCAUGAAUUGGGGAGUUUUUGGUCGUAGGCGUGGUCGGGCUUGAUUAUUAUUUUUCAUCCCGUUCCUCGUCUCGCCAAUGAAUAUUAAAUUUACGUGCAUAUUCUUUUUGGUCUUCGUUUUUUUACGGCGAGGGCCUUUAACGGGAAUAUCCUCAGCACGUUAUCUGACUUCUUCACGCGAAAGCUUUGAGGUUACAGUCUCAGGGGGGAGUACGUUCGCAAGAGUGAAACUUAAAGAAAUUGACGGAAUGGCACCACAAGACGUGGAGCGUGCGGUUUAAUUUGACUCAACACGGGGAACUUUACCAGAUCCGGACAGGGUGAGGAUUGACAGAUUGAGUGUUCUUUCUCGAUCCCCUGAAUGGUGGUGCAUGGCCGCUUUUGGUCGGUGGAGUGAUUUGUUUGGUUGAUUCCGUCAACGGACGAGAUCCAAGCUGCCCAGUAGGAUUCAGAAUUGCCCAUAGGAUAGCAAUCCCUUCCGCGGGUUUUACCCAAGGGGGGGCGGUAUUCGCUUGUAUCCUUCUCUGCGGGAUUCCUUGUUUUGCGCAAGGUGAGAUUUUGGGCAACAGCAGGUCUGUGAUGCUCCUCAAUGUUCUGGGCGACACGCGCACUACAAUGUCAGUGAGAACAAGAAAAACGACUCUUGUCGGACCUACUUGAUCAAAAGAGUGGGAAAACCCCGGAAUCACGUAGACCCACUUGGGACCGAGUAUUGCAAUUAUUGGUCGCGCAACGAGGAAUGUCUCGUAGGCGCAGCUCAUCAAACUGUGCCGAUUACGUCCCUGCCAUUUGUACACACCGCCCGUCGUUGUUUCCGAUGAUGGUGCAAUACAGGUGAUCGGACAGUCGAGUGCUUCACUUGACCGAAAGUUCACCGAUAUUUCUUCAAUAGAGGAAGCAAAAGUCGUAACAAGGUAGCUGUAGGUGAACCUGCAGCUGGAUCAUUU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2017-08-10 Deposition Author(s): Bochler, A. , Brito Querido, J. , Chicher, J. , Hashem, Y. , Mancera-Martinez, E. , Simonetti, A. , Vicens, Q.