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FASTA Sequence PDB Format mmCIF Format
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5O6V

The cryo-em structure of tick-borne encephalitis virus complexed with fab fragment of neutralizing antibody 19/1786

PDB DOI: 10.2210/pdb5o6v/pdb

Classification: VIRUS
Organism(s): Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr)

Deposited: 2017-06-07
Deposition Author(s): Fuzik, T. , Plevka, P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

5o6v
Literature

The cryo-em structure of tick-borne encephalitis virus complexed with fab fragment of neutralizing antibody 19/1786

Fuzik, T. , Plevka, P.

Primary Citation of Related Structures: 5O6V


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope protein A 496 Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr) SRCTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENPAQTREYCLHAKLSDTKVAARCPTMGPATLAEEHQGGTVCKRDQSDRGWGNHCGLFGKGSIVACVKAACEAKKKATGHVYDANKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSEKTILTMGEYGDVSLLCRVASGVDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGARNWNNAERLVEFGAPHAVKMDVYNLGDQTGVLLKALAGVPVAHIEGTKYHLKSGHVTCEVGLEKLKMKGLTYTMCDKTKFTWKRAPTDSGHDTVVMEVTFSGTKPCRIPVRAVAHGSPDVNVAMLITPNPTIENNGGGFIEMQLPPGDNIIYVGELSYQWFQKGSSIGRVFQKTKKGIERLTVIGEHAWDFGSAGGFLSSIGKALHTVLGGAFNSIFGGVGFLPKLLLGVALAWLGLNMRNPTMSMSFLLAGVLVLAMTLGVGA
Envelope protein B 496 Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr) SRCTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENPAQTREYCLHAKLSDTKVAARCPTMGPATLAEEHQGGTVCKRDQSDRGWGNHCGLFGKGSIVACVKAACEAKKKATGHVYDANKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSEKTILTMGEYGDVSLLCRVASGVDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGARNWNNAERLVEFGAPHAVKMDVYNLGDQTGVLLKALAGVPVAHIEGTKYHLKSGHVTCEVGLEKLKMKGLTYTMCDKTKFTWKRAPTDSGHDTVVMEVTFSGTKPCRIPVRAVAHGSPDVNVAMLITPNPTIENNGGGFIEMQLPPGDNIIYVGELSYQWFQKGSSIGRVFQKTKKGIERLTVIGEHAWDFGSAGGFLSSIGKALHTVLGGAFNSIFGGVGFLPKLLLGVALAWLGLNMRNPTMSMSFLLAGVLVLAMTLGVGA
Envelope protein C 496 Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr) SRCTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENPAQTREYCLHAKLSDTKVAARCPTMGPATLAEEHQGGTVCKRDQSDRGWGNHCGLFGKGSIVACVKAACEAKKKATGHVYDANKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSEKTILTMGEYGDVSLLCRVASGVDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGARNWNNAERLVEFGAPHAVKMDVYNLGDQTGVLLKALAGVPVAHIEGTKYHLKSGHVTCEVGLEKLKMKGLTYTMCDKTKFTWKRAPTDSGHDTVVMEVTFSGTKPCRIPVRAVAHGSPDVNVAMLITPNPTIENNGGGFIEMQLPPGDNIIYVGELSYQWFQKGSSIGRVFQKTKKGIERLTVIGEHAWDFGSAGGFLSSIGKALHTVLGGAFNSIFGGVGFLPKLLLGVALAWLGLNMRNPTMSMSFLLAGVLVLAMTLGVGA
Small envelope protein M D 75 Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr) SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
Small envelope protein M E 75 Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr) SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
Small envelope protein M F 75 Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr) SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
Fab 19/1786 - Heavy chain H 212 Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr) EVKLEESGGGLVQPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLELVAATNSDGDSTYYPDSVKGRFTISRDRAKNTLYLQMSSLKSEDTAMYYCTRVLYDYDGEFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSKTWPSETVTCNVAHPASSTK
Fab 19/1786 - Heavy chain I 212 Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr) EVKLEESGGGLVQPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLELVAATNSDGDSTYYPDSVKGRFTISRDRAKNTLYLQMSSLKSEDTAMYYCTRVLYDYDGEFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSKTWPSETVTCNVAHPASSTK
Fab 19/1786 - Light chain L 208 Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr) DIVMTQSQKFMSTSVGDRVTVTCKASQNVGTNVAWYQQKPGQSPKGLIYSASYRYSGVPDRFIGSGSGTDFTLTISNVQSGDLAEYFCQQYNNHPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQDGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS
Fab 19/1786 - Light chain M 208 Mus Musculus , Tick-Borne Encephalitis Virus (Strain Hypr) DIVMTQSQKFMSTSVGDRVTVTCKASQNVGTNVAWYQQKPGQSPKGLIYSASYRYSGVPDRFIGSGSGTDFTLTISNVQSGDLAEYFCQQYNNHPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQDGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-06-07
Deposition Author(s): Fuzik, T. , Plevka, P.