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5O60

Structure of the 50s large ribosomal subunit from mycobacterium smegmatis

PDB DOI: 10.2210/pdb5o60/pdb

Classification: RIBOSOME
Organism(s): Mycobacterium Smegmatis Str. Mc2 155

Deposited: 2017-06-02
Deposition Author(s): Ban, N. , Boehringer, D. , Burnside, C. , Hentschel, J. , Leibundgut, M. , Mignot, I.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.18 Å

5o60
Literature

Structure of the 50s large ribosomal subunit from mycobacterium smegmatis

Ban, N. , Boehringer, D. , Burnside, C. , Hentschel, J. , Leibundgut, M. , Mignot, I.

Primary Citation of Related Structures: 5O60


Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein bL37 3 24 Mycobacterium Smegmatis Str. Mc2 155 MAKRGRKKRDRKHSKANHGKRPNA
50S ribosomal protein L10 I 175 Mycobacterium Smegmatis Str. Mc2 155 MAKADKATAVADIAEQFKASTATVVTEYRGLTVANLAELRRALGDSATYTVAKNTLVKRAASEAGIEGLDELFAGPTAIAFVKGEAVDAAKAIKKFAKDNKALVIKGGYMDGKALSVADVEKIADLESREVLLAKLAGAMKGNLSKAAGLFNAPASQVARLAAALQEKKAGEEAA
50S ribosomal protein L11 J 142 Mycobacterium Smegmatis Str. Mc2 155 MAPKKKVAGLIKLQIQAGQANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGNVIPVEITVYEDRSFTFALKTPPAAKLLLKAAGVQKGSGEPHKTKVAKVTWDQVREIAETKKADLNANDIDAAAKIIAGTARSMGITVE
50S ribosomal protein L13 K 147 Mycobacterium Smegmatis Str. Mc2 155 MPTYTPKAGDTTRSWYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAAQQPIPFEIKQVAQ
50S ribosomal protein L14 L 122 Mycobacterium Smegmatis Str. Mc2 155 MIQQESRLKVADNTGAKEILCIRVLGGSSRRYAGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRADGSYIKFDENAAVIIKNDNDPRGTRIFGPVGRELREKKFMKIVSLAPEVL
50S ribosomal protein L15 M 147 Mycobacterium Smegmatis Str. Mc2 155 MSVIKLHDLKPAPGEKKAKTRVGRGEGSKGKTAGRGTKGTKARKNVPVMFEGGQMPIHMRLPKLKGFKNRFRTEYQVVNVGDINKAFPQGGTVGVDELVAKGLVRKNSLVKVLGDGKLTVKVDVTANKFSGSAREAITAAGGSATEL
50S ribosomal protein L16 N 138 Mycobacterium Smegmatis Str. Mc2 155 MLIPRKVKHRKQHHPEQRGIASGGTSVSFGDYGIQALEHAYITNRQIESARIAINRHIKRGGKVWINIFPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSYPDEKTARDALTRAIHKLPIKARIVTREEQF
50S ribosomal protein L17 O 199 Mycobacterium Smegmatis Str. Mc2 155 MPKPTKGPRLGGSSSHQSALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGALHNRREVMKKIRDKDVVHTLFAEIGPFYADRNGGYTRIIKVENRKGDNAPMAVIELVREKTVTDEANRARRAAASQAKADERADEKADEKAEETVEETTEAPAEESTEAAAEETVEETTEAPAEESTEAAEESEAKDDTK
50S ribosomal protein L18 P 127 Mycobacterium Smegmatis Str. Mc2 155 MAHKPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAHSVRVGQLIAERAKAAGVETVVFDRGGYTYGGRIAALADAAREAGLKF
50S ribosomal protein L19 Q 113 Mycobacterium Smegmatis Str. Mc2 155 MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNIDHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR
50S ribosomal protein L20 R 129 Mycobacterium Smegmatis Str. Mc2 155 MARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLIQGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPSGEAA
50S ribosomal protein L30 A 61 Mycobacterium Smegmatis Str. Mc2 155 MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVGK
50S ribosomal protein L21 S 103 Mycobacterium Smegmatis Str. Mc2 155 MATYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGIK
50S ribosomal protein L22 T 153 Mycobacterium Smegmatis Str. Mc2 155 MSTVTEFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPPKQKGASAASARSRRAQGSKAAATKKSAETKEGSE
50S ribosomal protein L23 U 100 Mycobacterium Smegmatis Str. Mc2 155 MATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTKRAIVKLAAGSKPIDLFGAPA
50S ribosomal protein L24 V 105 Mycobacterium Smegmatis Str. Mc2 155 MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI
50S ribosomal protein L25 W 215 Mycobacterium Smegmatis Str. Mc2 155 MAKTANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGAGETGAAEAPAEEAPAEEPAE
50S ribosomal protein L27 X 88 Mycobacterium Smegmatis Str. Mc2 155 MAHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNIVPVARPEA
50S ribosomal protein L28 Y 64 Mycobacterium Smegmatis Str. Mc2 155 MAAVCDICGKGPGFGKSVSHSHRRTSRRWNPNIQPVRAVTRPGGNKQRINACTSCIKAGKVSRA
50S ribosomal protein L29 Z 77 Mycobacterium Smegmatis Str. Mc2 155 MAVGTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELGLASGPAGEES
50S ribosomal protein L2 C 278 Mycobacterium Smegmatis Str. Mc2 155 MGIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGKGGRNAHGRITTRHKGGGHKRAYRVIDFRRHDKDGVNAKVAHIEYDPNRTANIALLHYLDGEKRYIIAPQGLKQGDVIESGANADIKPGNNLPLRNIPAGTVIHAVELRPGGGAKLARSAGVSIQLLGKEGTYAALRMPSGEIRRVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGKRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRKPNKPSDKLIVRRRRTGKKR
50S ribosomal protein L3 D 217 Mycobacterium Smegmatis Str. Mc2 155 MARKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTTERDGYSAVQLAYGEISPRKVIKPVAGQFAAAGVNPRRHVAELRLDDEAAVAEYEVGQELTAEIFSDGAYVDVTGTSKGKGFAGTMKRHGFRGQGAAHGAQAVHRRPGSIGGCATPGRVFKGTRMSGRMGNDRVTTQNLKVHKVDAENGVLLIKGAIPGRNGGLVVVRSAIKRGEK
50S ribosomal protein L4 E 215 Mycobacterium Smegmatis Str. Mc2 155 MTLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPDQLNTYDVLNADDVVFSVEALNAYISANSKEGASV
50S ribosomal protein L5 F 187 Mycobacterium Smegmatis Str. Mc2 155 MTTTEKALPRLKQRYREEIREALQQEFNYANVMQIPGVVKVVVNMGVGDAARDAKLINGAINDLALITGQKPEVRRARKSIAQFKLREGMPIGARVTLRGDRMWEFLDRLISIALPRIRDFRGLSPKQFDGTGNYTFGLNEQSMFHEIDVDSIDRPRGMDITVVTTATNDAEGRALLRALGFPFKEN
50S ribosomal protein L6 G 179 Mycobacterium Smegmatis Str. Mc2 155 MSRIGKQPVPVPSGVDVTINGQNLSVKGPKGTLTLDVAEPISVSRAEDGAIVVTRPDDERRSRSLHGLSRTLIANLVTGVTEGYTQKMEIFGVGYRVQLKGQNLEFALGYSHPVLIEAPEGITFAVESPTKFSVSGIDKQKVGQISAVIRRLRRPDPYKGKGVRYEGEQIRRKVGKTGK
50S ribosomal protein L9 H 151 Mycobacterium Smegmatis Str. Mc2 155 MKLILTAEVEHLGAAGDTVEVKDGYGRNYLLPRGLAIVASRGAERQAEEIRRARESKVIRDIEHANELKTALEGLGDVTLSVNAAGDTGKLFGSVTAADVVNAIKKAGGPNLDKRTVQLAKAHIKSVGTHPVTVKLHTGVEAKVSLNVVAQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5S rRNA b 118 NA GUUACGGCGGUCCAUAGCGGCAGGGAAACGCCCGGUCCCAUCCCGAACCCGGAAGCUAAGCCUGCCAGCGCCGAUGAUACUACCCAUCCGGGUGGAAAAGUAGGACACCGCCGAACAC
tRNA CCA-end acetylated (Phe) 2 3 NA CCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-06-02
Deposition Author(s): Ban, N. , Boehringer, D. , Burnside, C. , Hentschel, J. , Leibundgut, M. , Mignot, I.