5NP6
70s structure prior to bypassing
PDB DOI: 10.2210/pdb5np6/pdb
Classification: RIBOSOME Organism(s): Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct
Deposited: 2017-04-13 Deposition Author(s): Agirrezabala, X. , Gil-Carton, D. , Klimova, M. , Rodnina, M. , Samatova, E. , Valle, M. , Zamora, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.6 Å
70s structure prior to bypassing
Agirrezabala, X. , Gil-Carton, D. , Klimova, M. , Rodnina, M. , Samatova, E. , Valle, M. , Zamora, M.
Primary Citation of Related Structures: 5NP6
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L2 | A | 271 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | AVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRS |
| 50S ribosomal protein L15 | J | 143 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE |
| 50S ribosomal protein L16 | K | 136 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM |
| 50S ribosomal protein L17 | L | 120 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE |
| 50S ribosomal protein L18 | M | 116 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | DKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF |
| 50S ribosomal protein L19 | N | 114 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | SNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLN |
| 50S ribosomal protein L20 | O | 117 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA |
| 50S ribosomal protein L21 | P | 103 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGISA |
| 50S ribosomal protein L22 | Q | 110 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR |
| 50S ribosomal protein L23 | R | 93 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNL |
| 50S ribosomal protein L24 | S | 102 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETI |
| 50S ribosomal protein L3 | B | 209 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA |
| 50S ribosomal protein L25 | T | 94 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA |
| 50S ribosomal protein L27 | U | 75 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | RNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE |
| 50S ribosomal protein L28 | V | 77 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDKKGIDTVLAELRARGEKY |
| 50S ribosomal protein L29 | W | 63 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEKAGA |
| 50S ribosomal protein L30 | X | 58 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE |
| 50S ribosomal protein L32 | Y | 56 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK |
| 50S ribosomal protein L33 | Z | 50 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK |
| DNA topoisomerase small subunit | C | 46 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MKFVKIDSSSVDMKKYKLQNNVRRSIKSSSMNYANVAIMTDADHDG |
| 30S ribosomal protein S2 | E | 218 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS |
| 30S ribosomal protein S3 | F | 206 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEI |
| 30S ribosomal protein S4 | G | 205 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK |
| 30S ribosomal protein S5 | H | 157 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILG |
| 30S ribosomal protein S6 | I | 100 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEAS |
| 50S ribosomal protein L34 | 0 | 46 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK |
| 50S ribosomal protein L35 | 1 | 64 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA |
| 50S ribosomal protein L36 | 2 | 38 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG |
| 50S ribosomal protein L10 | 3 | 131 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPT |
| 50S ribosomal protein L31 | 4 | 66 | Enterobacteria Phage T4 , Escherichia Coli , Escherichia Coli (Strain K12) , Synthetic Construct | MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNI |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S ribosomal RNA | d | 1539 | NA | AAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2017-04-13 Deposition Author(s): Agirrezabala, X. , Gil-Carton, D. , Klimova, M. , Rodnina, M. , Samatova, E. , Valle, M. , Zamora, M.